Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph scatter-wf2_v1_0.cwl

https://github.com/common-workflow-language/cwl-utils.git

Path: testdata/scatter-wf2_v1_0.cwl

Branch/Commit ID: ed26684328ca370c247f549166f3edcb14a2f9e0
workflow graph tt_kmer_top_n.cwl

https://github.com/ncbi/pgap.git

Path: task_types/tt_kmer_top_n.cwl

Branch/Commit ID: 4e7b8f243f5356653edd286eab24f419f39da189
workflow graph bact_get_kmer_reference

https://github.com/ncbi/pgap.git

Path: task_types/tt_bact_get_kmer_reference.cwl

Branch/Commit ID: 093b60e546237c06cfe7820d6ac8d66467e66725
workflow graph Execute CRISPR

https://github.com/ncbi/pgap.git

Path: bacterial_mobile_elem/wf_bacterial_mobile_elem.cwl

Branch/Commit ID: 4e7b8f243f5356653edd286eab24f419f39da189
workflow graph kmer_ref_compare_wnode

https://github.com/ncbi/pgap.git

Path: task_types/tt_kmer_ref_compare_wnode.cwl

Branch/Commit ID: 4e7b8f243f5356653edd286eab24f419f39da189
workflow graph rRNA annotation workflow with scatter processing

\"This workflow performs rRNA annotation processing for multiple index files using scatter. It executes 4 processes: makeblastdb, blastn alignment, filtering, and rRNA removal for each rRNA index file. related CWL file: ./Tools/09_makeblastdb_rRNA.cwl ./Tools/10_blastn_rRNA_alignment.cwl ./Tools/10_blastn_rRNA_filter1.cwl ./Tools/10_blastn_rRNA_filter2.cwl ./Tools/10_blastn_rRNA_filter3.cwl\"

https://github.com/RyoMameda/workflow_cwl.git

Path: Workflow/blastn_rRNA_ssw.cwl

Branch/Commit ID: 1838569c1d6d3c15f58c254667d4c6258e67e5a6
workflow graph Bacterial Annotation, pass 4, blastp-based functional annotation (second pass)

https://github.com/ncbi/pgap.git

Path: bacterial_annot/wf_bacterial_annot_pass4.cwl

Branch/Commit ID: 6a29751f2b16659c1592f1e94837c989e68f3b8b
workflow graph js_output_workflow.cwl

https://github.com/common-workflow-language/cwltool.git

Path: tests/wf/js_output_workflow.cwl

Branch/Commit ID: f453cdce5956fe6581f5ccdcb8aacb8c4f29f6d4
workflow graph cond-single-source-wf-005.1.cwl

https://github.com/common-workflow-language/cwl-utils.git

Path: testdata/cond-single-source-wf-005.1.cwl

Branch/Commit ID: 88ad2a6ad70d7124b094e0cb3e5f72b78078c7e2
workflow graph autosubmit.cwl

An example workflow created using Autosubmit's basic a000 workflow as reference. The `platform.yml` is ignored as it contains only information about platforms (e.g. it could be given to a tool like Troika as-is). `expdef.yml` and `autosubmit.yml` basically provide CWL inputs. `jobs.yml` contains the steps of the CWL workflow, with their dependencies. In CWL dependencies are specified via inputs and outputs. When task A outputs a value X, and task B has an input of type A/X, then the dependency A -> B is created in CWl. This is different than Autosubmit, and needs some care to guarantee the correct order in the workflow graph of start dates, members, chunks, etc.

https://github.com/kinow/kinoshita.eti.br.git

Path: notes/autosubmit/autosubmit.cwl

Branch/Commit ID: 18fd808804bf464ef1dc7f95d331c995bd70f0ac