Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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assm_assm_blastn_wnode
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https://github.com/ncbi/pgap.git
Path: task_types/tt_assm_assm_blastn_wnode.cwl Branch/Commit ID: 1b9094d70f620bb2e51072dd2150150aa4927439 |
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kallisto_wf_se.cwl
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https://github.com/pitagora-network/pitagora-cwl.git
Path: workflows/kallisto/single_end/kallisto_wf_se.cwl Branch/Commit ID: f85f2cd5d888ed947f47a391eb32dcb53265f9b3 |
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somatic_subpipeline.cwl
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https://github.com/PMCC-BioinformaticsCore/janis-pipelines.git
Path: janis_pipelines/wgs_somatic/cwl/tools/somatic_subpipeline.cwl Branch/Commit ID: 5ba65e4781f03a74a845b7cd40bbf4c2ae3a9844 |
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THOR - differential peak calling of ChIP-seq signals with replicates
What is THOR? -------------- THOR is an HMM-based approach to detect and analyze differential peaks in two sets of ChIP-seq data from distinct biological conditions with replicates. THOR performs genomic signal processing, peak calling and p-value calculation in an integrated framework. For more information please refer to: ------------------------------------- Allhoff, M., Sere K., Freitas, J., Zenke, M., Costa, I.G. (2016), Differential Peak Calling of ChIP-seq Signals with Replicates with THOR, Nucleic Acids Research, epub gkw680. |
https://github.com/datirium/workflows.git
Path: workflows/rgt-thor.cwl Branch/Commit ID: 480e99a4bb3046e0565113d9dca294e0895d3b0c |
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star-cufflinks_wf_se.cwl
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https://github.com/pitagora-network/pitagora-cwl.git
Path: workflows/star-cufflinks/single_end/star-cufflinks_wf_se.cwl Branch/Commit ID: f85f2cd5d888ed947f47a391eb32dcb53265f9b3 |
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foreign_screening.cwl
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https://github.com/ncbi/pgap.git
Path: vecscreen/foreign_screening.cwl Branch/Commit ID: a402541b8530f30eab726c160da90a23036847a1 |
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exome alignment with qc
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/alignment_exome.cwl Branch/Commit ID: 7638b3075863ae8172f4adaec82fb2eb8e80d3d5 |
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advanced-header.cwl
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https://github.com/datirium/workflows.git
Path: metadata/advanced-header.cwl Branch/Commit ID: 2005c6b7f1bff6247d015ff6c116bd9ec97158bb |
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tophat2-cufflinks_wf_pe.cwl
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https://github.com/pitagora-network/pitagora-cwl.git
Path: workflows/tophat2-cufflinks/paired_end/tophat2-cufflinks_wf_pe.cwl Branch/Commit ID: f85f2cd5d888ed947f47a391eb32dcb53265f9b3 |
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foreign_screening.cwl
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https://github.com/ncbi/pgap.git
Path: vecscreen/foreign_screening.cwl Branch/Commit ID: 75ea689c0a8c9902b4598b453455857cb08e885a |
