Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
|---|---|---|---|
|
|
bwa_index
|
https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/cwl/abstract_operations/subworkflows/bwa_index.cwl Branch/Commit ID: 27011e882ea07bfcac23faec299341ec6215312b |
|
|
|
wf_get_peaks_scatter_chimeric_se.cwl
The \"main\" workflow. Takes fastq files generated using the seCLIP protocol (https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5991800/) and outputs candidate RBP binding regions (peaks). runs: wf_get_peaks_se.cwl through scatter across multiple samples. |
https://github.com/YeoLab/eclip.git
Path: cwl/wf_get_peaks_scatter_chimeric_se.cwl Branch/Commit ID: 49a9bcda10de8f55fab2481f424eb9cdf2e5b256 |
|
|
|
wf_get_peaks_scatter_se_nostats.cwl
The \"main\" workflow. Takes fastq files generated using the seCLIP protocol (https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5991800/) and outputs candidate RBP binding regions (peaks). runs: wf_get_peaks_se.cwl through scatter across multiple samples. |
https://github.com/YeoLab/eclip.git
Path: cwl/wf_get_peaks_scatter_se_nostats.cwl Branch/Commit ID: 49a9bcda10de8f55fab2481f424eb9cdf2e5b256 |
|
|
|
kmer_ref_compare_wnode
|
https://github.com/ncbi/pgap.git
Path: task_types/tt_kmer_ref_compare_wnode.cwl Branch/Commit ID: 9362082213e20315f76f6f5c235cac3aae565747 |
|
|
|
bwa_index
|
https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/cwl/subworkflows/bwa_index.cwl Branch/Commit ID: f248ac3ccbf6840af721251c7e9451abd9b2c09f |
|
|
|
kmer_seq_entry_extract_wnode
|
https://github.com/ncbi/pgap.git
Path: task_types/tt_kmer_seq_entry_extract_wnode.cwl Branch/Commit ID: 9362082213e20315f76f6f5c235cac3aae565747 |
|
|
|
gcaccess_from_list
|
https://github.com/ncbi/pgap.git
Path: task_types/tt_gcaccess_from_list.cwl Branch/Commit ID: 9362082213e20315f76f6f5c235cac3aae565747 |
|
|
|
taxonomy_check_16S
|
https://github.com/ncbi-gpipe/pgap.git
Path: task_types/tt_taxonomy_check_16S.cwl Branch/Commit ID: c08fd46e8f715b9b5aa487466705863e4b1829df |
|
|
|
wf_clipseqcore_nostats_se_1barcode.cwl
|
https://github.com/YeoLab/eclip.git
Path: cwl/wf_clipseqcore_nostats_se_1barcode.cwl Branch/Commit ID: 49a9bcda10de8f55fab2481f424eb9cdf2e5b256 |
|
|
|
kmer_build_tree
|
https://github.com/ncbi/pgap.git
Path: task_types/tt_kmer_build_tree.cwl Branch/Commit ID: 9362082213e20315f76f6f5c235cac3aae565747 |
