Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	pindel parallel workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/pindel.cwl Branch/Commit ID: 742dbafb5fb103d8578f48a0576c14dd8dae3b2a
	mutect parallel workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/mutect.cwl Branch/Commit ID: 742dbafb5fb103d8578f48a0576c14dd8dae3b2a
	Detect Docm variants	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/docm_cle.cwl Branch/Commit ID: 742dbafb5fb103d8578f48a0576c14dd8dae3b2a
	exome alignment with qc	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/alignment_exome.cwl Branch/Commit ID: d3e4bf55753cd92f97537c7d701187ea92d1e5f0
	genomics-workspace-cds.cwl	https://github.com/nal-i5k/organism_onboarding.git Path: flow_genomicsWorkspace/genomics-workspace-cds.cwl Branch/Commit ID: 3aabbb0f6635bb9354ad52f616ab7cfc61848eb6
	adapter for sequence_align_and_tag Some workflow engines won't stage files in our nested structure, so parse it out here	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/sequence_align_and_tag_adapter.cwl Branch/Commit ID: 06d2440d115b446c299b4ce96e8812d2f8df86ec
	scRNA-seq pipeline using Salmon and Alevin	https://github.com/hubmapconsortium/salmon-rnaseq.git Path: pipeline.cwl Branch/Commit ID: b93bc6aa65654195660233facae0166e892ae133
	Non-Coding Bacterial Genes	https://github.com/ncbi/pgap.git Path: bacterial_noncoding/wf_bacterial_noncoding.cwl Branch/Commit ID: 5ec226c941562124032ca6861bc8d1aeabf9d91a
	wf_trim_and_map_pe.cwl This workflow takes in appropriate trimming params and demultiplexed reads, and performs the following steps in order: trimx1, trimx2, fastq-sort, filter repeat elements, fastq-sort, genomic mapping, sort alignment, index alignment, namesort, PCR dedup, sort alignment, index alignment	https://github.com/YeoLab/eclip.git Path: cwl/wf_trim_and_map_pe.cwl Branch/Commit ID: b2b95f58f96ee5b34bd9b342d0ecda63d135e278
	Varscan Workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/varscan_pre_and_post_processing.cwl Branch/Commit ID: bed420556091b7b8b45cf20a95e5947e1de9a416