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Graph	Name	Retrieved From	View
	picard_markduplicates Mark duplicates	https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git Path: structuralvariants/subworkflows/picard_markduplicates.cwl Branch/Commit ID: 3bb03c9bac5b2150632d008aec28fb27c510e908
	bwa_mem	https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git Path: structuralvariants/subworkflows/bwa_mem.cwl Branch/Commit ID: 3bb03c9bac5b2150632d008aec28fb27c510e908
	bwa_index	https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git Path: structuralvariants/subworkflows/bwa_index.cwl Branch/Commit ID: 3bb03c9bac5b2150632d008aec28fb27c510e908
	cnv_gridss CNV GRIDSS calling	https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git Path: structuralvariants/subworkflows/cnv_gridss.cwl Branch/Commit ID: 3bb03c9bac5b2150632d008aec28fb27c510e908
	trimmed_fastq Quality Control (raw data), Raw Data trimming and Quality Control (pre-processed)	https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git Path: structuralvariants/subworkflows/trimmed_fastq.cwl Branch/Commit ID: 3bb03c9bac5b2150632d008aec28fb27c510e908
	samtools_view_sam2bam	https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git Path: structuralvariants/subworkflows/samtools_view_sam2bam.cwl Branch/Commit ID: 3bb03c9bac5b2150632d008aec28fb27c510e908
	bacterial_orthology	https://github.com/ncbi/pgap.git Path: bacterial_orthology/wf_bacterial_orthology.cwl Branch/Commit ID: 9362082213e20315f76f6f5c235cac3aae565747
	samtools_view_sam2bam	https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git Path: structuralvariants/subworkflows/samtools_view_sam2bam.cwl Branch/Commit ID: c494fa4f60d9215842c4d2c75ed7d89757435b0f
	Whole genome alignment and somatic variant detection	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/somatic_wgs.cwl Branch/Commit ID: a08de598edc04f340fdbff76c9a92336a7702022
	bwa_mem	https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git Path: structuralvariants/subworkflows/bwa_mem.cwl Branch/Commit ID: cebfad2f456d672052ef8c83f5ff1b4f3b4368e4