Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
|---|---|---|---|
|
|
SoupX (workflow) - an R package for the estimation and removal of cell free mRNA contamination
Wrapped in a workflow SoupX tool for easy access to Cell Ranger pipeline compressed outputs. |
https://github.com/datirium/workflows.git
Path: tools/soupx-subworkflow.cwl Branch/Commit ID: e45ab1b9ac5c9b99fdf7b3b1be396dc42c2c9620 |
|
|
|
cluster_blastp_wnode and gpx_qdump combined
|
https://github.com/ncbi/pgap.git
Path: task_types/tt_cluster_and_qdump.cwl Branch/Commit ID: 9362082213e20315f76f6f5c235cac3aae565747 |
|
|
|
Detect Variants workflow for WGS pipeline
|
https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/detect_variants_wgs.cwl Branch/Commit ID: a08de598edc04f340fdbff76c9a92336a7702022 |
|
|
|
gathered exome alignment and somatic variant detection for cle purpose
|
https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/somatic_exome_cle_gathered.cwl Branch/Commit ID: a08de598edc04f340fdbff76c9a92336a7702022 |
|
|
|
cnv_exomedepth
CNV ExomeDepth calling |
https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/subworkflows/cnv_exome_depth.cwl Branch/Commit ID: 3bb03c9bac5b2150632d008aec28fb27c510e908 |
|
|
|
samtools_sort
|
https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/subworkflows/samtools_sort.cwl Branch/Commit ID: 3bb03c9bac5b2150632d008aec28fb27c510e908 |
|
|
|
bam_filtering
BAM filtering |
https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/subworkflows/bam_filtering.cwl Branch/Commit ID: 3bb03c9bac5b2150632d008aec28fb27c510e908 |
|
|
|
cnv_codex
CNV CODEX calling |
https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/subworkflows/cnv_codex.cwl Branch/Commit ID: 3bb03c9bac5b2150632d008aec28fb27c510e908 |
|
|
|
cnv_manta
CNV Manta calling |
https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/subworkflows/cnv_manta.cwl Branch/Commit ID: 3bb03c9bac5b2150632d008aec28fb27c510e908 |
|
|
|
final_filtering
Final filtering |
https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/subworkflows/final_filtering.cwl Branch/Commit ID: 3bb03c9bac5b2150632d008aec28fb27c510e908 |
