Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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05-quantification.cwl
ATAC-seq - Quantification |
https://github.com/Duke-GCB/GGR-cwl.git
Path: v1.0/ATAC-seq_pipeline/05-quantification.cwl Branch/Commit ID: c50b80e9b0eaaf4613f9feca44b3463bbfd288d5 |
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facets-suite-workflow.cwl
Workflow for running the facets suite workflow on a single tumor normal pair Includes handling of errors in case execution fails for the sample pair |
https://github.com/mskcc/pluto-cwl.git
Path: cwl/facets-suite-workflow.cwl Branch/Commit ID: c10d8bcf045067b3510bff68e2e957fccea0d7ea |
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count-lines10-wf.cwl
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https://github.com/common-workflow-language/cwltool.git
Path: cwltool/schemas/v1.0/v1.0/count-lines10-wf.cwl Branch/Commit ID: 4bf61c8a3d519eefd8b9271af73974bec62535ba |
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FASTQ to BQSR
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/fastq_to_bqsr.cwl Branch/Commit ID: a9133c999502acf94b433af8d39897e6c2cdf65f |
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pass-unconnected.cwl
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https://github.com/common-workflow-language/cwl-v1.1.git
Path: tests/pass-unconnected.cwl Branch/Commit ID: 5e3fac092a720c5670ae3e787eabe1aaade71d83 |
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SoupX (workflow) - an R package for the estimation and removal of cell free mRNA contamination
Wrapped in a workflow SoupX tool for easy access to Cell Ranger pipeline compressed outputs. |
https://github.com/Barski-lab/workflows.git
Path: tools/soupx-subworkflow.cwl Branch/Commit ID: d80d4f126eb60579dc3c3faf90996acc802155f2 |
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Detect Docm variants
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/docm_cle.cwl Branch/Commit ID: 4ae14dd3a447c90022e3dfeb53fc05b8436e2775 |
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SSU-from-tablehits.cwl
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https://github.com/EBI-Metagenomics/ebi-metagenomics-cwl.git
Path: tools/SSU-from-tablehits.cwl Branch/Commit ID: 135976dc51f067b76db0a923a832d892ed64264c |
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blastp_wnode_struct
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https://github.com/ncbi/pgap.git
Path: task_types/tt_blastp_wnode_struct.cwl Branch/Commit ID: 192b813eed8c0d368e69057cb39415175dd15128 |
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extract_gencoll_ids
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https://github.com/ncbi/pgap.git
Path: task_types/tt_extract_gencoll_ids.cwl Branch/Commit ID: 01a5c0a8834846ce04fed190eec7d1cc39a3df48 |
