Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	Bacterial Annotation, pass 1, genemark training, by HMMs (first pass)	https://github.com/ncbi/pgap.git Path: bacterial_annot/wf_bacterial_annot_pass1.cwl Branch/Commit ID: 5ec226c941562124032ca6861bc8d1aeabf9d91a
	Bisulfite QC tools	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/bisulfite_qc.cwl Branch/Commit ID: 742dbafb5fb103d8578f48a0576c14dd8dae3b2a
	Filter Protein Seeds I; Find ProSplign Alignments I	https://github.com/ncbi/pgap.git Path: protein_alignment/wf_compart_filter_prosplign.cwl Branch/Commit ID: 5ec226c941562124032ca6861bc8d1aeabf9d91a
	Alignment without BQSR	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/sequence_to_bqsr_mouse.cwl Branch/Commit ID: 06d2440d115b446c299b4ce96e8812d2f8df86ec
	bam to trimmed fastqs and biscuit alignments	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/bam_to_trimmed_fastq_and_biscuit_alignments.cwl Branch/Commit ID: 06d2440d115b446c299b4ce96e8812d2f8df86ec
	Unaligned BAM to BQSR	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/bam_to_bqsr.cwl Branch/Commit ID: 06d2440d115b446c299b4ce96e8812d2f8df86ec
	Alignment without BQSR	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/sequence_to_bqsr_mouse.cwl Branch/Commit ID: c625e05eefb1754353c1bdfa46c01dc61e6233dd
	strelka workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/strelka_and_post_processing.cwl Branch/Commit ID: bed420556091b7b8b45cf20a95e5947e1de9a416
	adapter for sequence_align_and_tag Some workflow engines won't stage files in our nested structure, so parse it out here	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/sequence_align_and_tag_adapter.cwl Branch/Commit ID: bed420556091b7b8b45cf20a95e5947e1de9a416
	PGAP Pipeline PGAP pipeline for external usage, powered via containers	https://github.com/ncbi/pgap.git Path: wf_common.cwl Branch/Commit ID: 5ec226c941562124032ca6861bc8d1aeabf9d91a