Explore Workflows

https://github.com/MontgomeryLab/tinyRNA.git

Path: tiny/cwl/workflows/preprocessing.cwl

Branch/Commit ID: 943cb16fc421f0a37df3619086cbd0330c78174e

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/bam_to_trimmed_fastq_and_biscuit_alignments.cwl

Branch/Commit ID: 0fae6bb8a15c634b054ec747e31bdfbc67954c92

Process an input file to from DL0 to separate DL1 and DL2 outputs.

https://gitlab.cta-observatory.org/cta-computing/dpps/dpps-workflows.git

Path: datapipe/workflow_dl0_to_dl2.cwl

Branch/Commit ID: 00038b11f42dee4e66a16b22214cc1779cf43461

https://github.com/ncbi/pgap.git

Path: task_types/tt_taxonomy_check_16S.cwl

Branch/Commit ID: 5461e63dc4714bb81e1c9f58e436c8465107a199

https://github.com/common-workflow-language/cwl-v1.2.git

Path: tests/step-valuefrom-wf.cwl

Branch/Commit ID: 5f27e234b4ca88ed1280dedf9e3391a01de12912

https://github.com/common-workflow-language/cwl-v1.2.git

Path: tests/timelimit2-wf.cwl

Branch/Commit ID: 5f27e234b4ca88ed1280dedf9e3391a01de12912

QIIME2 Deblur, feature summaries, phylogenetic diversity tree, taxonomic analysis and ancom

https://github.com/duke-gcb/bespin-cwl.git

Path: packed/qiime2-step2-deblur.cwl

Branch/Commit ID: e2dc95d4f12210359360d814382e7201d836dfcf

Packed ID: main

https://github.com/ncbi/pgap.git

Path: wf_bacterial_prot_src.cwl

Branch/Commit ID: 933a0b7554e4ae76a86d25c76b408b5dfc8ed1e3

RNAs - qc, preprocess, annotation, index, abundance

https://github.com/MG-RAST/pipeline.git

Path: CWL/Workflows/amplicon-fasta.workflow.cwl

Branch/Commit ID: 1b1bb901b849b32cbfc4cb58d736bb617d514319

https://github.com/common-workflow-language/cwltool.git

Path: tests/wf/cache_test_workflow.cwl

Branch/Commit ID: f8f24046875aa90764cf54736df926363aa326d1