Explore Workflows

RNAs - qc, preprocess, annotation, index, abundance

https://github.com/MG-RAST/pipeline.git

Path: CWL/Workflows/amplicon-fasta.workflow.cwl

Branch/Commit ID: 662d424d2e433e636f46a79025325d5daaca6271

https://github.com/NCI-GDC/gdc-dnaseq-cwl.git

Path: workflows/fastq_readgroup_stats/runner.cwl

Branch/Commit ID: 3fa737f9162bbfbdbc243a3b1ff7c8e110875eba

Simple 2 step workflow to check that workflow steps are independently picking up on the number of processes. First run the parallel get PIDs step (on the input num procs) then run (on a single proc) the line count. This should equal the input.

https://github.com/common-workflow-language/cwltool.git

Path: tests/wf/mpi_simple_wf.cwl

Branch/Commit ID: 9b603df77aeb586d122daa2c6c6b1ae40cd54f21

https://github.com/ncbi/cwl-demos.git

Path: blast-pipelines/simple_magicblast.cwl

Branch/Commit ID: 6e5f11a9e5a136deb39d4798da9c7cf28b912eae

https://git.astron.nl/RD/LINC.git

Path: workflows/HBA_target_VLBI.cwl

Branch/Commit ID: dc7a4f725f6e8dde49b0b1db2e3fbde7fb19990a

https://github.com/common-workflow-language/cwl-v1.2.git

Path: tests/count-lines10-wf.cwl

Branch/Commit ID: eb3f25a9e9414a7dba394f7627e02e63d7f1418c

https://git.astron.nl/eosc/prefactor3-cwl.git

Path: workflows/HBA_calibrator.cwl

Branch/Commit ID: dc7a4f725f6e8dde49b0b1db2e3fbde7fb19990a

This workflow creates a subsample from a BAM file creating a tagAlign and pseudoreplicates

https://github.com/ncbi/cwl-ngs-workflows-cbb.git

Path: workflows/File-formats/subample-pseudoreplicates.cwl

Branch/Commit ID: 590ed6c9803ba670411c48650bc24deef7863925

https://github.com/common-workflow-language/cwl-utils.git

Path: testdata/scatter-wf3_v1_1.cwl

Branch/Commit ID: b9de3783981045be450b58bd420fadda7d7c81a0

Packed ID: main

https://github.com/common-workflow-language/cwltool.git

Path: tests/wf/1st-workflow.cwl

Branch/Commit ID: 9b603df77aeb586d122daa2c6c6b1ae40cd54f21