Explore Workflows

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Graph Name Retrieved From View
workflow graph BD Rhapsody™ Targeted Analysis Pipeline

The BD Rhapsody™ assays are used to create sequencing libraries from single cell transcriptomes. After sequencing, the analysis pipeline takes the FASTQ files and a reference file for gene alignment. The pipeline generates molecular counts per cell, read counts per cell, metrics, and an alignment file.

 https://github.com/longbow0/cwl.git

Path: v1.9-beta/rhapsody_targeted_1.9-beta.cwl

Branch/Commit ID: master

Packed ID: main
workflow graph checkm

https://github.com/ncbi/pgap.git

Path: checkm/wf_checkm.cwl

Branch/Commit ID: test
workflow graph EMG pipeline v3.0 (single end version)

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: workflows/emg-pipeline-v3.cwl

Branch/Commit ID: 0cd2d70
workflow graph qc_uncollapsed_bam

https://github.com/msk-access/qc_generation.git

Path: access_qc__packed.cwl

Branch/Commit ID: develop

Packed ID: qc_uncollapsed_bam.cwl
workflow graph infuse_pipeline.cwl

https://github.com/cancerit/cgpRna.git

Path: cwls/infuse_pipeline.cwl

Branch/Commit ID: dev
workflow graph ST520112.cwl

https://github.com/Marco-Salvi/cwl-test.git

Path: wf5201/ST520112.cwl

Branch/Commit ID: main
workflow graph transcriptome_annotation.cwl

https://github.com/ncbi/cloud-transcriptome-annotation.git

Path: bin/cwl-ngs-workflows-cbb/workflows/Annotation/transcriptome_annotation.cwl

Branch/Commit ID: master
workflow graph Find reads with predicted coding sequences above 60 AA in length

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: workflows/orf_prediction.cwl

Branch/Commit ID: 71d9c83
workflow graph count-lines16-wf.cwl

https://github.com/common-workflow-language/cwl-v1.2.git

Path: tests/count-lines16-wf.cwl

Branch/Commit ID: main
workflow graph md5sum-workflow.cwl

https://github.com/fhembroff/md5sum-checker.git

Path: md5sum/md5sum-workflow.cwl

Branch/Commit ID: master