Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph Motif Finding with HOMER with target and background regions from peaks

Motif Finding with HOMER with target and background regions from peaks --------------------------------------------------- HOMER contains a novel motif discovery algorithm that was designed for regulatory element analysis in genomics applications (DNA only, no protein). It is a differential motif discovery algorithm, which means that it takes two sets of sequences and tries to identify the regulatory elements that are specifically enriched in on set relative to the other. It uses ZOOPS scoring (zero or one occurrence per sequence) coupled with the hypergeometric enrichment calculations (or binomial) to determine motif enrichment. HOMER also tries its best to account for sequenced bias in the dataset. It was designed with ChIP-Seq and promoter analysis in mind, but can be applied to pretty much any nucleic acids motif finding problem. For more information please refer to: ------------------------------------- [Official documentation](http://homer.ucsd.edu/homer/motif/)

 https://github.com/datirium/workflows.git

Path: workflows/homer-motif-analysis-peak.cwl

Branch/Commit ID: a0b22644ca178b640fb74849d23b7c631022f0b5
workflow graph Aligning chipseq data of mouse

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/sequence_to_bqsr_mouse.cwl

Branch/Commit ID: 3a822294da63b4e19446a285e2fef075e23cf3d0
workflow graph cache_test_workflow.cwl

https://github.com/common-workflow-language/cwltool.git

Path: tests/wf/cache_test_workflow.cwl

Branch/Commit ID: 7dec97bb8f0bc2d9e9eb710faf41f2e98cc7cdda
workflow graph FragPipe_TMT_Integrator_and_QC.wf.cwl

https://github.com/davidroberson/fragpipe-proteomics-pipeline-tutorial.git

Path: FragPipe_TMT_Integrator_and_QC.wf.cwl

Branch/Commit ID: ccbb5317e8a2ddf36aab215a12d65f89d152e63b
workflow graph sec-wf-out.cwl

https://github.com/common-workflow-language/cwltool.git

Path: tests/wf/sec-wf-out.cwl

Branch/Commit ID: 7dec97bb8f0bc2d9e9eb710faf41f2e98cc7cdda
workflow graph Vcf concordance evaluation workflow

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/vcf_eval_concordance.cwl

Branch/Commit ID: 77ec4f26eb14ed82481828bd9f6ef659cfd8b40f
workflow graph ani_top_n

https://github.com/ncbi/pgap.git

Path: task_types/tt_ani_top_n.cwl

Branch/Commit ID: b38b0070edf910984f29a4a495b5dfa525b8b305
workflow graph FragPipe_ProteinProphet.wf.cwl

https://github.com/davidroberson/fragpipe-proteomics-pipeline-tutorial.git

Path: FragPipe_ProteinProphet.wf.cwl

Branch/Commit ID: ccbb5317e8a2ddf36aab215a12d65f89d152e63b
workflow graph FragPipe_Filter_Quant_Report.wf.cwl

https://github.com/davidroberson/fragpipe-proteomics-pipeline-tutorial.git

Path: FragPipe_Filter_Quant_Report.wf.cwl

Branch/Commit ID: ccbb5317e8a2ddf36aab215a12d65f89d152e63b
workflow graph gvcf-distr.cwl

https://github.com/Sentieon/Sentieon-cwl.git

Path: stage/gvcf-distr.cwl

Branch/Commit ID: 845f4699c5fce96a4c708a553b3701c9cf296653