Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	Bacterial Annotation, pass 3, structural annotation, functional annotation: ab initio GeneMark, by WP, by HMM (second pass)	https://github.com/ncbi/pgap.git Path: bacterial_annot/wf_bacterial_annot_pass3.cwl Branch/Commit ID: 7e875f77b615b4f7ebfb23a1da30eb216cc52919
	gp_makeblastdb	https://github.com/ncbi/pgap.git Path: progs/gp_makeblastdb.cwl Branch/Commit ID: 7e875f77b615b4f7ebfb23a1da30eb216cc52919
	Varscan Workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/varscan_germline.cwl Branch/Commit ID: 735be84cdea041fcc8bd8cbe5728b29ca3586a21
	Run genomic CMsearch (Rfam rRNA)	https://github.com/ncbi/pgap.git Path: bacterial_ncrna/wf_gcmsearch.cwl Branch/Commit ID: 7e875f77b615b4f7ebfb23a1da30eb216cc52919
	bam to trimmed fastqs and HISAT alignments	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/bam_to_trimmed_fastq_and_hisat_alignments.cwl Branch/Commit ID: dc2c019c1aa24cc01b451a0f048cf94a35f163c4
	cwlsite.cwl	https://github.com/common-workflow-language/cwltool.git Path: cwltool/schemas/site/cwlsite.cwl Branch/Commit ID: f997d13af87216e9b5048c732a511053c7ba714c
	PGAP Pipeline PGAP pipeline for external usage, powered via containers	https://github.com/ncbi/pgap.git Path: wf_common.cwl Branch/Commit ID: cabb1a9a95244e93294727be8cf5816c38992cb0
	umi duplex alignment workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/duplex_alignment.cwl Branch/Commit ID: 40097e1ed094c5b42b68f3db2ff2cbe78c182479
	count-lines10-wf.cwl	https://github.com/common-workflow-language/common-workflow-language.git Path: v1.0/v1.0/count-lines10-wf.cwl Branch/Commit ID: a062055fddcc7d7d9dbc53d28288e3ccb9a800d8
	Bisulfite alignment and QC	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/bisulfite.cwl Branch/Commit ID: 40097e1ed094c5b42b68f3db2ff2cbe78c182479