Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph strelka workflow

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/strelka_and_post_processing.cwl

Branch/Commit ID: 9cbf2a483e1b9e4cdb8e2564be27a9e64fc1169e
workflow graph FASTQ to BQSR

https://github.com/tmooney/cancer-genomics-workflow.git

Path: definitions/subworkflows/fastq_to_bqsr.cwl

Branch/Commit ID: 233f026ffce240071edda526391be0c03186fce8
workflow graph scatter-valuefrom-wf4.cwl#main

https://github.com/common-workflow-language/cwltool.git

Path: cwltool/schemas/v1.0/v1.0/scatter-valuefrom-wf4.cwl

Branch/Commit ID: 4df56e95e6fceab69e677b539f3532cbf5946197

Packed ID: main
workflow graph process VCF workflow

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/strelka_process_vcf.cwl

Branch/Commit ID: 9cbf2a483e1b9e4cdb8e2564be27a9e64fc1169e
workflow graph Detect Variants workflow

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/detect_variants_nonhuman.cwl

Branch/Commit ID: 8c4e7372247a7f4ed9ed478ef8ea1d239bc88af0
workflow graph FASTQ Vector Removal

This workflow clean up vectros from fastq files

 https://github.com/ncbi/cwl-ngs-workflows-cbb.git

Path: workflows/File-formats/fastq-vector-removal.cwl

Branch/Commit ID: ebf1dd3c243c08634b0b3d9766c0a354903920ee
workflow graph kmer_seq_entry_extract_wnode

https://github.com/ncbi/pgap.git

Path: task_types/tt_kmer_seq_entry_extract_wnode.cwl

Branch/Commit ID: 33dcc054a8718edad26440f085d73b7c5d7b7871
workflow graph running cellranger mkfastq and count

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/cellranger_mkfastq_and_count.cwl

Branch/Commit ID: f45b52a24c7b54a75368dcbab24b4eb2c5a9c75a
workflow graph Chipseq alignment for mouse with qc and creating homer tag directory

https://github.com/tmooney/cancer-genomics-workflow.git

Path: definitions/pipelines/chipseq_alignment_mouse.cwl

Branch/Commit ID: 233f026ffce240071edda526391be0c03186fce8
workflow graph WGS QC workflow

https://github.com/fgomez02/analysis-workflows.git

Path: definitions/subworkflows/qc_wgs.cwl

Branch/Commit ID: 9c9e6a6a48eb321804ce772a2c2c12b4f2f32529