Explore Workflows

https://github.com/ncbi/pgap.git

Path: task_types/tt_kmer_compare_wnode.cwl

Branch/Commit ID: ddd1e2c08590d809c5cf325e32d596861878e6f8

https://github.com/ncbi/pgap.git

Path: task_types/tt_assm_assm_blastn_wnode.cwl

Branch/Commit ID: f3bc91cf1320f75967ec2719b1506b75f23cb4b6

https://github.com/NCI-GDC/gdc-dnaseq-cwl.git

Path: workflows/bamfastq_align/transform_pack.cwl

Branch/Commit ID: a57b8f0d8708078e87f13297e065d72db10e38a0

Packed ID: readgroup_fastq_pe.cwl

First computes average per UniProt domain instance and then aligns all the average structures against core average structure. Outputs the alignment results along with the structures passing and failing the threshold for given Kpax score.

https://github.com/HrishiDhondge/CroMaSt.git

Path: Tools/unmapped_unp_avg_align.cwl

Branch/Commit ID: 47a0b8969fb885ed3754c4f06d3045cd0312dd3a

https://github.com/bcbio/bcbio_validation_workflows.git

Path: NA24385-sv/NA24385-sv-workflow/wf-svcall.cwl

Branch/Commit ID: c4592973b1580e3ff44cb697f64b12345b91e6f5

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/bam_to_trimmed_fastq_and_hisat_alignments.cwl

Branch/Commit ID: 767e3dc7448da5bc44e4817c4161f6e4530032e2

https://github.com/hubmapconsortium/sc-atac-seq-pipeline.git

Path: steps/bulk_process.cwl

Branch/Commit ID: 44dbe381f68878ab607b167b62267c4ea97f3322

PGAP pipeline for external usage, powered via containers, simple user input: (FASTA + yaml only, no template)

https://github.com/ncbi/pgap.git

Path: pgap.cwl

Branch/Commit ID: f225cd99b0e0a5043dd102f8b33a6139fefe9ea4

https://github.com/kids-first/kf-rnaseq-workflow.git

Path: workflow/kfdrc_flagstat_qc.cwl

Branch/Commit ID: 35ec1dd653f65a05ca198651147dcd46d05f2258

https://github.com/common-workflow-language/cwl-v1.2.git

Path: tests/search.cwl

Branch/Commit ID: 551d58d409ef2a0fa2e3ab93b85167dd7d4b1833

Packed ID: main