Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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trimmed_fastq
Quality Control (raw data), Raw Data trimming and Quality Control (pre-processed) |
https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/subworkflows/trimmed_fastq.cwl Branch/Commit ID: c84d205c8239b7dea9d1b49e3e166973c3ebcd66 |
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Replace legacy AML Trio Assay
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/cle_aml_trio.cwl Branch/Commit ID: 441b85003fdc10cf4cbf333d89acb4d23b0fef32 |
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bam to trimmed fastqs and biscuit alignments
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/bam_to_trimmed_fastq_and_biscuit_alignments.cwl Branch/Commit ID: 046e980d131ebaf71f76599a749e2294c40c9d0d |
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wffail.cwl
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https://github.com/common-workflow-language/cwltool.git
Path: tests/wf/wffail.cwl Branch/Commit ID: e62a8406b448220969ee172699f61c5ca379d60c |
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trick_revsort.cwl
Reverse the lines in a document, then sort those lines. |
https://github.com/common-workflow-language/cwltool.git
Path: tests/wf/trick_revsort.cwl Branch/Commit ID: f8f24046875aa90764cf54736df926363aa326d1 |
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step-valuefrom2-wf.cwl
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https://github.com/common-workflow-language/cwltool.git
Path: cwltool/schemas/v1.0/v1.0/step-valuefrom2-wf.cwl Branch/Commit ID: 63f539ba60e91f0cb3ce7cda2c5da5c65525c375 |
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count-lines1-wf.cwl
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https://github.com/common-workflow-language/cwltool.git
Path: tests/wf/count-lines1-wf.cwl Branch/Commit ID: f8f24046875aa90764cf54736df926363aa326d1 |
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igv-report_maf_workflow.cwl
Workflow to run GetBaseCountsMultiSample fillout on a number of samples, each with their own bam and maf files |
https://github.com/mskcc/pluto-cwl.git
Path: cwl/igv-report_maf_workflow.cwl Branch/Commit ID: 2e1a01a788126f2901ffecc92a48fcbcb81776e1 |
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pipeline-se.cwl
ATAC-seq pipeline - reads: SE |
https://github.com/Duke-GCB/GGR-cwl.git
Path: v1.0/ATAC-seq_pipeline/pipeline-se.cwl Branch/Commit ID: 7696e7eb27a9251fba53ef4ccacc84cc8f8b0685 |
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Nested workflow example
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https://github.com/common-workflow-language/cwltool.git
Path: tests/wf/double-nested.cwl Branch/Commit ID: f8f24046875aa90764cf54736df926363aa326d1 |
