Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	dynresreq-workflow.cwl	https://github.com/common-workflow-language/cwltool.git Path: cwltool/schemas/v1.0/v1.0/dynresreq-workflow.cwl Branch/Commit ID: 4df56e95e6fceab69e677b539f3532cbf5946197
	running cellranger mkfastq and count	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/cellranger_mkfastq_and_count.cwl Branch/Commit ID: 8c4e7372247a7f4ed9ed478ef8ea1d239bc88af0
	Raw sequence data to BQSR	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/sequence_to_bqsr.cwl Branch/Commit ID: 4aba7c6591c2f1ebd827a36d325a58738c429bea
	extract_gencoll_ids	https://github.com/ncbi/pgap.git Path: task_types/tt_extract_gencoll_ids.cwl Branch/Commit ID: 001e133e0eedaf0dd8447e3f8b3cc898ec6e3e1d
	downsample unaligned BAM and align	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/downsampled_alignment.cwl Branch/Commit ID: 4aba7c6591c2f1ebd827a36d325a58738c429bea
	Bacterial Annotation, pass 1, genemark training, by HMMs (first pass)	https://github.com/ncbi/pgap.git Path: bacterial_annot/wf_bacterial_annot_pass1.cwl Branch/Commit ID: 7cee09fb3e33c851e4e1dfc965c558b82290a785
	Bacterial Annotation, pass 2, blastp-based functional annotation (first pass)	https://github.com/ncbi/pgap.git Path: bacterial_annot/wf_bacterial_annot_pass2.cwl Branch/Commit ID: 7cee09fb3e33c851e4e1dfc965c558b82290a785
	Bacterial Annotation, pass 3, structural annotation, functional annotation: ab initio GeneMark, by WP, by HMM (second pass)	https://github.com/ncbi/pgap.git Path: bacterial_annot/wf_bacterial_annot_pass3.cwl Branch/Commit ID: 7cee09fb3e33c851e4e1dfc965c558b82290a785
	Bacterial Annotation, pass 4, blastp-based functional annotation (second pass)	https://github.com/ncbi/pgap.git Path: bacterial_annot/wf_bacterial_annot_pass4.cwl Branch/Commit ID: 7cee09fb3e33c851e4e1dfc965c558b82290a785
	Execute CRISPR	https://github.com/ncbi/pgap.git Path: bacterial_mobile_elem/wf_bacterial_mobile_elem.cwl Branch/Commit ID: 7cee09fb3e33c851e4e1dfc965c558b82290a785