Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	Create Genomic Collection for Bacterial Pipeline, ASN.1 input	https://github.com/ncbi/pgap.git Path: genomic_source/wf_genomic_source_asn.cwl Branch/Commit ID: 4b73bfeb967ee9f57a0410276f7c39e784f0846f
	wf_trim_partial_and_map_se.cwl This workflow takes in appropriate trimming params and demultiplexed reads, and performs the following steps in order: trimx1, trimx2, fastq-sort, filter repeat elements, fastq-sort, genomic mapping, sort alignment, index alignment, namesort, PCR dedup, sort alignment, index alignment	https://github.com/yeolab/eclip.git Path: cwl/wf_trim_partial_and_map_se.cwl Branch/Commit ID: 49a9bcda10de8f55fab2481f424eb9cdf2e5b256
	cluster_blastp_wnode and gpx_qdump combined	https://github.com/ncbi/pgap.git Path: task_types/tt_cluster_and_qdump.cwl Branch/Commit ID: cd97086739ae5988bab09b05e9259675c4b6bce6
	Hello World Outputs a message using echo	https://github.com/common-workflow-library/legacy.git Path: workflows/hello/hello-param.cwl Branch/Commit ID: 767d700e602805112a4c953d166e570cddfa2605
	steps.cwl	https://github.com/dimitrapanou/scrnaseq-cwl.git Path: steps.cwl Branch/Commit ID: b8e641c2cb33197bdbdc04c9fb9cfbd818af1d94
	lobSTR-workflow.cwl	https://github.com/common-workflow-library/legacy.git Path: workflows/lobSTR/lobSTR-workflow.cwl Branch/Commit ID: 17b65ea19d81527090fded62ffa0e1ba3b25d561
	rRNA_selection.cwl	https://github.com/EBI-Metagenomics/ebi-metagenomics-cwl.git Path: tools/rRNA_selection.cwl Branch/Commit ID: 43d2fb8a5430dc56b55e84e3986d0079cad8d185
	assm_assm_blastn_wnode	https://github.com/ncbi/pgap.git Path: task_types/tt_assm_assm_blastn_wnode.cwl Branch/Commit ID: 4b73bfeb967ee9f57a0410276f7c39e784f0846f
	Running cellranger count and lineage inference	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/single_cell_rnaseq.cwl Branch/Commit ID: 735be84cdea041fcc8bd8cbe5728b29ca3586a21
	EMG pipeline v3.0 (single end version)	https://github.com/EBI-Metagenomics/ebi-metagenomics-cwl.git Path: workflows/emg-pipeline-v3.cwl Branch/Commit ID: 886df9de6713e06228d2560c40f451155a196383