Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	Subworkflow that runs cnvkit in single sample mode and returns a vcf file	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/cnvkit_single_sample.cwl Branch/Commit ID: 2decd55996b912feb48be5db1b052aa3274ee405
	format_rrnas_from_seq_entry	https://github.com/ncbi-gpipe/pgap.git Path: task_types/tt_format_rrnas_from_seq_entry.cwl Branch/Commit ID: c08fd46e8f715b9b5aa487466705863e4b1829df
	vqsr-flow.cwl run vqsr flow, including vqsr rcal, vqsr apply and plot	https://github.com/Sentieon/Sentieon-cwl.git Path: stage/vqsr-flow.cwl Branch/Commit ID: 845f4699c5fce96a4c708a553b3701c9cf296653
	Protein Ligand Complex MD Setup tutorial using BioExcel Building Blocks (biobb) Common Workflow Language example that illustrate the process of setting up a simulation system containing a protein, step by step, using the BioExcel Building Blocks library (biobb). The particular example used is the Lysozyme protein (PDB code 1AKI).	https://github.com/bioexcel/biobb-wf-md-setup-protein-cwl.git Path: protein_md.cwl Branch/Commit ID: c7a9b4180e1e65f2e6d8fdeb7f8dbbf5c2433dfa
	merge and annotate svs with population allele freq	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/merge_svs.cwl Branch/Commit ID: 5c4125344b1b9125ad04d7e768ecc99901570a7a
	Subworkflow that runs cnvkit in single sample mode and returns a vcf file	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/cnvkit_single_sample.cwl Branch/Commit ID: 389f6edccab082d947bee9c032f59dbdf9f7c325
	bam to trimmed fastqs and HISAT alignments	https://github.com/fgomez02/analysis-workflows.git Path: definitions/subworkflows/bam_to_trimmed_fastq_and_hisat_alignments.cwl Branch/Commit ID: 9c9e6a6a48eb321804ce772a2c2c12b4f2f32529
	assemble.cwl Assemble a set of reads using SKESA	https://github.com/ncbi/pgap.git Path: assemble.cwl Branch/Commit ID: 5ec226c941562124032ca6861bc8d1aeabf9d91a
	kmer_gc_extract_wnode	https://github.com/ncbi-gpipe/pgap.git Path: task_types/tt_kmer_gc_extract_wnode.cwl Branch/Commit ID: c08fd46e8f715b9b5aa487466705863e4b1829df
	Varscan Workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/varscan_germline.cwl Branch/Commit ID: 3a822294da63b4e19446a285e2fef075e23cf3d0