Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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fireprot.cwl
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https://github.com/CERIT-SC/fireprot.git
Path: fireprot.cwl Branch/Commit ID: a2b0c18f117dcf2b0d7e33c59c0f180b6a9bf709 |
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js-expr-req-wf.cwl#wf
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https://github.com/common-workflow-language/cwltool.git
Path: cwltool/schemas/v1.0/v1.0/js-expr-req-wf.cwl Branch/Commit ID: fc6ca8b1498926f705dcfde7ab0a365bd09a9675 Packed ID: wf |
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io-int-optional-wf.cwl
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https://github.com/common-workflow-language/common-workflow-language.git
Path: v1.0/v1.0/io-int-optional-wf.cwl Branch/Commit ID: 1f501e38ff692a408e16b246ac7d64d32f0822c2 |
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cnv_manta
CNV Manta calling |
https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/cwl/abstract_operations/subworkflows/cnv_manta.cwl Branch/Commit ID: de9cb009f8fe0c8d5a94db5c882cf21ddf372452 |
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RNA-seq alelle specific pipeline for single-read data
Allele specific RNA-Seq single-read workflow |
https://github.com/datirium/workflows.git
Path: workflows/allele-rnaseq-se.cwl Branch/Commit ID: 6bf56698c6fe6e781723dea32bc922b91ef49cf3 |
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Transcripts annotation workflow
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https://github.com/EBI-Metagenomics/workflow-is-cwl.git
Path: workflows/TranscriptsAnnotation-wf.cwl Branch/Commit ID: 26dad276bac124f89086268bcbca962a5c0caca6 |
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rnaseq-pe.cwl
RNA-Seq basic analysis workflow for paired-end experiment. |
https://github.com/datirium/workflows.git
Path: workflows/rnaseq-pe.cwl Branch/Commit ID: cf107bc24a37883ef01b959fd89c19456aaecc02 |
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allele-alignreads-se-pe.cwl
Workflow maps FASTQ files from `fastq_files` input into reference genome `reference_star_indices_folder` and insilico generated `insilico_star_indices_folder` genome (concatenated genome for both `strain1` and `strain2` strains). For both genomes STAR is run with `outFilterMultimapNmax` parameter set to 1 to discard all of the multimapped reads. For insilico genome SAM file is generated. Then it's splitted into two SAM files based on strain names and then sorted by coordinates into the BAM format. For reference genome output BAM file from STAR slignment is also coordinate sorted. |
https://github.com/datirium/workflows.git
Path: subworkflows/allele-alignreads-se-pe.cwl Branch/Commit ID: a9551ece898f619167db58e4b74a6cae2d7f7d13 |
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scatter-wf4.cwl#main
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https://github.com/common-workflow-language/cwltool.git
Path: tests/wf/scatter-wf4.cwl Branch/Commit ID: 20d664eff23e59aa57908345bfdb1ceeab3438f2 Packed ID: main |
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Nested workflow example
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https://github.com/common-workflow-language/cwltool.git
Path: tests/wf/nested.cwl Branch/Commit ID: 4c905b830371eee45188a53510ba0ee9113fd4c8 |
