Explore Workflows
View already parsed workflows here or click here to add your own
Graph | Name | Retrieved From | View |
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Per-chromosome pindel
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![]() Path: pindel/pindel_cat.cwl Branch/Commit ID: ab3cc1f460146c60d7de417508f0c1ea70506e6a |
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wgs alignment with qc
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![]() Path: definitions/pipelines/alignment_wgs.cwl Branch/Commit ID: 7638b3075863ae8172f4adaec82fb2eb8e80d3d5 |
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MACE ChIP-exo peak caller workflow for single-end samples
This workflow execute peak caller and QC from ChIP-exo for single-end samples using MACE |
![]() Path: workflows/ChIP-exo/peak-caller-MACE-SE.cwl Branch/Commit ID: acabffb2a61c25972437635ca466140c0669b490 |
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exome alignment and germline variant detection
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![]() Path: definitions/subworkflows/germline_detect_variants.cwl Branch/Commit ID: 7638b3075863ae8172f4adaec82fb2eb8e80d3d5 |
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WGS QC workflow nonhuman
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![]() Path: definitions/subworkflows/qc_wgs_nonhuman.cwl Branch/Commit ID: 7638b3075863ae8172f4adaec82fb2eb8e80d3d5 |
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Subworkflow to allow calling different SV callers which require bam files as inputs
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![]() Path: definitions/subworkflows/single_sample_sv_callers.cwl Branch/Commit ID: 7638b3075863ae8172f4adaec82fb2eb8e80d3d5 |
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Exome QC workflow
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![]() Path: definitions/subworkflows/qc_exome.cwl Branch/Commit ID: 7638b3075863ae8172f4adaec82fb2eb8e80d3d5 |
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bacterial_orthology
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![]() Path: bacterial_orthology/wf_bacterial_orthology.cwl Branch/Commit ID: e2a6cbcc36212433d8fbc804919442787a5e2a49 |
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scatter GATK HaplotypeCaller over intervals
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![]() Path: definitions/subworkflows/gatk_haplotypecaller_iterator.cwl Branch/Commit ID: 7638b3075863ae8172f4adaec82fb2eb8e80d3d5 |
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wf_full_IDR_pipeline_2inputs_sample.cwl
This workflow essentially restructures the inputs before sending to wf_full_IDR_pipeline_2inputs.cwl |
![]() Path: cwl/wf_full_IDR_pipeline_2inputs_sample.cwl Branch/Commit ID: aedc0a14d4ba109ee65678a3201a52c5bb6ad473 |