Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	ani_top_n	https://github.com/ncbi-gpipe/pgap.git Path: task_types/tt_ani_top_n.cwl Branch/Commit ID: 70e530b65b33301032b7510095d89e497bf5e34e
	gather AML trio outputs	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/aml_trio_cle_gathered.cwl Branch/Commit ID: 43c790e2ee6a0f3f42e40fb4d9a9005eb8de747a
	Running cellranger count and lineage inference	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/single_cell_rnaseq.cwl Branch/Commit ID: 43c790e2ee6a0f3f42e40fb4d9a9005eb8de747a
	workflow.cwl	https://github.com/nal-i5k/organism_onboarding.git Path: flow_dispatch/2blat/workflow.cwl Branch/Commit ID: 7198756b4b1519d102178042924671bd677e9b17
	kmer_ref_compare_wnode	https://github.com/ncbi/pgap.git Path: task_types/tt_kmer_ref_compare_wnode.cwl Branch/Commit ID: 7c8eb4d23c3c9859f57421643710c0b6d57b606c
	LSU-from-tablehits.cwl	https://github.com/proteinswebteam/ebi-metagenomics-cwl.git Path: tools/LSU-from-tablehits.cwl Branch/Commit ID: 25129f55226dee595ef941edc24d3c44414e0523
	cluster_blastp_wnode and gpx_qdump combined	https://github.com/ncbi/pgap.git Path: task_types/tt_cluster_and_qdump.cwl Branch/Commit ID: 75ea689c0a8c9902b4598b453455857cb08e885a
	bacterial_orthology	https://github.com/ncbi/pgap.git Path: bacterial_orthology/wf_bacterial_orthology.cwl Branch/Commit ID: 1e7aa9f0c34987ddafa35f9b1d2c77d99fafbdab
	Bacterial Annotation, pass 1, genemark training, by HMMs (first pass)	https://github.com/ncbi/pgap.git Path: bacterial_annot/wf_bacterial_annot_pass1.cwl Branch/Commit ID: e2a6cbcc36212433d8fbc804919442787a5e2a49
	wf_rescue_ratio_2inputs.cwl Calculates the rescue ratio (see Gabe's protocols paper), given two eCLIP IP samples and 2 size-matched input samples. Also returns the reproducible peaks given these two samples. This is different from the 1input workflow in that each INPUT is first merged together and is used downstream instead of the 1input version, which remains unmodified. Merged inputs are NOT used in calculating true reproducible peaks.	https://github.com/YeoLab/merge_peaks.git Path: cwl/wf_rescue_ratio_2inputs.cwl Branch/Commit ID: aedc0a14d4ba109ee65678a3201a52c5bb6ad473