Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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phase VCF
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/phase_vcf.cwl Branch/Commit ID: 2decd55996b912feb48be5db1b052aa3274ee405 |
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HS Metrics workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/hs_metrics.cwl Branch/Commit ID: 5c4125344b1b9125ad04d7e768ecc99901570a7a |
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CLE gold vcf evaluation workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/vcf_eval_cle_gold.cwl Branch/Commit ID: 2decd55996b912feb48be5db1b052aa3274ee405 |
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Build Bowtie indices
Workflow runs [Bowtie](http://bowtie-bio.sourceforge.net/tutorial.shtml) v1.2.0 (12/30/2016) to build indices for reference genome provided in a single FASTA file as fasta_file input. Generated indices are saved in a folder with the name that corresponds to the input genome |
https://github.com/datirium/workflows.git
Path: workflows/bowtie-index.cwl Branch/Commit ID: 17a4a68b20e0af656e09714c1f39fe761b518686 |
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Build Bowtie indices
Workflow runs [Bowtie](http://bowtie-bio.sourceforge.net/tutorial.shtml) v1.2.0 (12/30/2016) to build indices for reference genome provided in a single FASTA file as fasta_file input. Generated indices are saved in a folder with the name that corresponds to the input genome |
https://github.com/datirium/workflows.git
Path: workflows/bowtie-index.cwl Branch/Commit ID: e0a30aa1ad516dd2ec0e9ce006428964b840daf4 |
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giab_haplotypecaller.cwl
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https://github.com/uc-cdis/genomel_pipelines.git
Path: genomel/cwl/workflows/variant_calling/giab_haplotypecaller.cwl Branch/Commit ID: 0f8f97e6173085500b688ca8c601b1ce966dce33 |
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02-trim-se.cwl
ATAC-seq 02 trimming - reads: SE |
https://github.com/Duke-GCB/GGR-cwl.git
Path: v1.0/ATAC-seq_pipeline/02-trim-se.cwl Branch/Commit ID: 8d02684ae0ff27e641f3704686e3bc8b1979b854 |
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Detect DoCM variants
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/docm_germline.cwl Branch/Commit ID: 2decd55996b912feb48be5db1b052aa3274ee405 |
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AltAnalyze Prepare Genome
Devel version of AltAnalyze Prepare Genome ========================================== hg38 is not supported. Use hardcoded EnsMart72 until AltAnalyze starts support more recent Ensembl releases. |
https://github.com/datirium/workflows.git
Path: workflows/altanalyze-prepare-genome.cwl Branch/Commit ID: e0a30aa1ad516dd2ec0e9ce006428964b840daf4 |
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04-peakcall-se.cwl
ATAC-seq 04 quantification - SE |
https://github.com/Duke-GCB/GGR-cwl.git
Path: v1.0/ATAC-seq_pipeline/04-peakcall-se.cwl Branch/Commit ID: 8d02684ae0ff27e641f3704686e3bc8b1979b854 |
