Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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scatter-wf4.cwl#main
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https://github.com/common-workflow-language/cwltool.git
Path: tests/wf/scatter-wf4.cwl Branch/Commit ID: main Packed ID: main |
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Run pindel on provided region
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https://github.com/tmooney/cancer-genomics-workflow.git
Path: definitions/subworkflows/pindel_region.cwl Branch/Commit ID: downsample_and_recall |
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cnv_exomedepth
CNV ExomeDepth calling |
https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/cwl/subworkflows/cnv_exome_depth.cwl Branch/Commit ID: 1.1.3 |
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abra_workflow.cwl
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https://github.com/mskcc/Innovation-Pipeline.git
Path: workflows/ABRA/abra_workflow.cwl Branch/Commit ID: master |
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foreign_screening.cwl
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https://github.com/ncbi/pgap.git
Path: vecscreen/foreign_screening.cwl Branch/Commit ID: test |
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Cell Ranger Reference (RNA, ATAC, RNA+ATAC)
Cell Ranger Reference (RNA, ATAC, RNA+ATAC) Builds a reference genome of a selected species for quantifying gene expression and chromatin accessibility. The results of this workflow are used in all “Cell Ranger Count” and “Cell Ranger Aggregate” pipelines. |
https://github.com/datirium/workflows.git
Path: workflows/cellranger-mkref.cwl Branch/Commit ID: 93b844a80f4008cc973ea9b5efedaff32a343895 |
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exome alignment with qc
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https://github.com/fgomez02/analysis-workflows.git
Path: definitions/pipelines/exome_alignment.cwl Branch/Commit ID: No_filters_detect_variants |
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vcf_concat.cwl
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https://github.com/mskcc/ACCESS-Pipeline.git
Path: workflows/subworkflows/vcf_concat.cwl Branch/Commit ID: master |
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abra_workflow.cwl
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https://github.com/andurill/ACCESS-Pipeline.git
Path: workflows/ABRA/abra_workflow.cwl Branch/Commit ID: 0.0.33_dmp |
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pipeline-se.cwl
DNase-seq pipeline - reads: SE |
https://github.com/alexbarrera/GGR-cwl.git
Path: v1.0/DNase-seq_pipeline/pipeline-se.cwl Branch/Commit ID: master |
