Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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taxonomy_check_16S
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https://github.com/ncbi/pgap.git
Path: task_types/tt_taxonomy_check_16S.cwl Branch/Commit ID: af78bfbc7625a817a2875e87c8ee267cf46b8c57 |
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default-wf5.cwl
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https://github.com/common-workflow-language/cwltool.git
Path: tests/wf/default-wf5.cwl Branch/Commit ID: 12993a6eb60f5ccb4edbe77cb6de661cfc496090 |
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Hello World
Outputs a message using echo |
https://github.com/common-workflow-language/cwltool.git
Path: tests/wf/hello-workflow.cwl Branch/Commit ID: e6c2d955a448225f026a04130443d13661844440 |
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SoupX (workflow) - an R package for the estimation and removal of cell free mRNA contamination
Wrapped in a workflow SoupX tool for easy access to Cell Ranger pipeline compressed outputs. |
https://github.com/datirium/workflows.git
Path: tools/soupx-subworkflow.cwl Branch/Commit ID: 8a92669a566589d80fde9d151054ffc220ed4ddd |
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vardictSomaticVariantCaller_v0_1_0.cwl
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https://github.com/PMCC-BioinformaticsCore/janis-pipelines.git
Path: janis_pipelines/wgs_somatic/cwl/tools/vardictSomaticVariantCaller_v0_1_0.cwl Branch/Commit ID: ccca639fe0b3a8104ff9fcfa285f1134706032b8 |
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tt_blastn_wnode
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https://github.com/ncbi/pgap.git
Path: task_types/tt_blastn_wnode.cwl Branch/Commit ID: af78bfbc7625a817a2875e87c8ee267cf46b8c57 |
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Build STAR indices
Workflow runs [STAR](https://github.com/alexdobin/STAR) v2.5.3a (03/17/2017) PMID: [23104886](https://www.ncbi.nlm.nih.gov/pubmed/23104886) to build indices for reference genome provided in a single FASTA file as fasta_file input and GTF annotation file from annotation_gtf_file input. Generated indices are saved in a folder with the name that corresponds to the input genome. |
https://github.com/datirium/workflows.git
Path: workflows/star-index.cwl Branch/Commit ID: 8a92669a566589d80fde9d151054ffc220ed4ddd |
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paramref_arguments_self.cwl
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https://github.com/common-workflow-language/cwltool.git
Path: tests/wf/paramref_arguments_self.cwl Branch/Commit ID: aec33fcfa3459a90cbba8c88ebb991be94d21429 |
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heatmap-prepare.cwl
Workflow runs homer-make-tag-directory.cwl tool using scatter for the following inputs - bam_file - fragment_size - total_reads `dotproduct` is used as a `scatterMethod`, so one element will be taken from each array to construct each job: 1) bam_file[0] fragment_size[0] total_reads[0] 2) bam_file[1] fragment_size[1] total_reads[1] ... N) bam_file[N] fragment_size[N] total_reads[N] `bam_file`, `fragment_size` and `total_reads` arrays should have the identical order. |
https://github.com/datirium/workflows.git
Path: tools/heatmap-prepare.cwl Branch/Commit ID: a8eaf61c809d76f55780b14f2febeb363cf6373f |
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directory.cwl
Inspect provided directory and return filenames. Generate a new directory and return it (including content). |
https://github.com/common-workflow-language/cwltool.git
Path: tests/wf/directory.cwl Branch/Commit ID: 2710cfe731374cf7244116dd7186fc2b6e4af344 |
