Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	kmer_build_tree	https://github.com/ncbi/pgap.git Path: task_types/tt_kmer_build_tree.cwl Branch/Commit ID: 7ebb8d2757914d16520b00571a281e2ad86a42cf
	final-workflow.cwl	https://github.com/nal-i5k/organism_onboarding.git Path: final-workflow.cwl Branch/Commit ID: 677d79c721ad5f7a7e09b693d7f3fe2da70826e2
	tt_blastn_wnode	https://github.com/ncbi/pgap.git Path: task_types/tt_blastn_wnode.cwl Branch/Commit ID: 609aead9804a8f31fa9b3dbc7e52105aec487f31
	Filter single sample sv vcf from paired read callers(Manta/Smoove)	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/sv_paired_read_caller_filter.cwl Branch/Commit ID: 788bdc99c1d5b6ee7c431c3c011eb30d385c1370
	Merge, annotate, and generate a TSV for SVs	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/merge_svs.cwl Branch/Commit ID: 788bdc99c1d5b6ee7c431c3c011eb30d385c1370
	exome alignment and germline variant detection	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/germline_exome_gvcf.cwl Branch/Commit ID: 87faba2fff8007ecc95160729b1c7cd0376e46f2
	bacterial_orthology	https://github.com/ncbi/pgap.git Path: bacterial_orthology/wf_bacterial_orthology.cwl Branch/Commit ID: 505b91e41741ccbcd5ebd2b6a09a3be604f9ece3
	ROSE: rank ordering of super-enhancers Super-enhancers, consist of clusters of enhancers that are densely occupied by the master regulators and Mediator. Super-enhancers differ from typical enhancers in size, transcription factor density and content, ability to activate transcription, and sensitivity to perturbation. Use to create stitched enhancers, and to separate super-enhancers from typical enhancers using sequencing data (.bam) given a file of previously identified constituent enhancers (.gff)	https://github.com/datirium/workflows.git Path: workflows/super-enhancer.cwl Branch/Commit ID: 4a5c59829ff8b9f3c843e66e3c675dcd9c689ed5
	tt_kmer_top_n.cwl	https://github.com/ncbi/pgap.git Path: task_types/tt_kmer_top_n.cwl Branch/Commit ID: 122aba2dafbb63241413c82b725b877c04523aaf
	Exome QC workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/qc_exome_no_verify_bam.cwl Branch/Commit ID: a59a803e1809a8fbfabca6b8962a8ad66dd01f1d