Explore Workflows
View already parsed workflows here or click here to add your own
Graph | Name | Retrieved From | View |
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ani_top_n
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![]() Path: task_types/tt_ani_top_n.cwl Branch/Commit ID: 5282690e0f634a5f83107ba878fe62cbbb347408 |
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phase VCF
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![]() Path: definitions/subworkflows/phase_vcf.cwl Branch/Commit ID: 6b365b79675b2aabfb8d5829bb8df0a6e986b037 |
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cluster_blastp_wnode and gpx_qdump combined
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![]() Path: task_types/tt_cluster_and_qdump.cwl Branch/Commit ID: 656113dcac0de7cef6cff6c688f61441ee05872a |
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Detect Variants workflow
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![]() Path: definitions/pipelines/detect_variants_nonhuman.cwl Branch/Commit ID: 87faba2fff8007ecc95160729b1c7cd0376e46f2 |
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trimmed_fastq
Quality Control (raw data), Raw Data trimming and Quality Control (pre-processed) |
![]() Path: structuralvariants/cwl/subworkflows/trimmed_fastq.cwl Branch/Commit ID: 9ac2d150a57d1996210ed6a44dd0c0404dab383c |
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lobSTR-workflow.cwl
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![]() Path: src/test/resources/cwl/lobstr-v1/lobSTR-workflow.cwl Branch/Commit ID: 4986dff2724b45d0f18989d949337ff0df3443d9 |
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kmer_top_n_extract
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![]() Path: task_types/tt_kmer_top_n_extract.cwl Branch/Commit ID: 505b91e41741ccbcd5ebd2b6a09a3be604f9ece3 |
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picard_markduplicates
Mark duplicates |
![]() Path: structuralvariants/cwl/abstract_operations/subworkflows/picard_markduplicates.cwl Branch/Commit ID: 26ae4914651d5b3e188028d1e9d88a391b3f6730 |
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FragPipe: Filter - Quant - Report
This workflow takes the PeptideProphet, and the ProteinProphet output files, and applies a stringent False Discovery Rate (FDR) filtering. Peptide and proteins are filtered individually at 1% FDR. The high-quality PSMs, peptides, and proteins are then quantified using a label-free algorithm that uses the apex peak intensity as a measurement. Finally, the isobaric tags are quantified and annotated with the correct sample labels. |
![]() Path: FragPipe-Filter-Quant-Report/fragpipe-filter-quant-report.cwl Branch/Commit ID: 080063b7443c98bc378935e16f747f8c542c9521 |
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downsample unaligned BAM and align
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![]() Path: definitions/subworkflows/downsampled_alignment.cwl Branch/Commit ID: 40097e1ed094c5b42b68f3db2ff2cbe78c182479 |