Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph Unaligned BAM to BQSR

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/bam_to_bqsr.cwl

Branch/Commit ID: 2979b565f88ceebca934611adbf3fb8cefd65a19
workflow graph EMG core analysis

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: workflows/emg-core-analysis-v4.cwl

Branch/Commit ID: b6d3aaf3fa6695061208c6cdca3d7881cc45400d
workflow graph Run genomic CMsearch

https://github.com/ncbi/pgap.git

Path: bacterial_noncoding/wf_gcmsearch.cwl

Branch/Commit ID: 0454b07df9acc67404a94e8f11a877132834bef5
workflow graph exomeseq-gatk4-01-preprocessing.cwl

https://github.com/duke-gcb/bespin-cwl.git

Path: subworkflows/exomeseq-gatk4-01-preprocessing.cwl

Branch/Commit ID: bbe24d8d7fde2e918583b96805909a2867b749d6
workflow graph align_merge_sas

https://github.com/ncbi/pgap.git

Path: task_types/tt_align_merge_sas.cwl

Branch/Commit ID: 2353ee2550529ca5b0705c94b32022a21713db18
workflow graph EMG pipeline v3.0 (single end version)

https://github.com/EBI-Metagenomics/ebi-metagenomics-cwl.git

Path: workflows/emg-pipeline-v3.cwl

Branch/Commit ID: 25129f55226dee595ef941edc24d3c44414e0523
workflow graph Trim and reformat reads (single and paired end version)

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: workflows/trim_and_reformat_reads.cwl

Branch/Commit ID: b6d3aaf3fa6695061208c6cdca3d7881cc45400d
workflow graph RNASelector as a CWL workflow

https://doi.org/10.1007/s12275-011-1213-z

 https://github.com/EBI-Metagenomics/ebi-metagenomics-cwl.git

Path: workflows/rna-selector.cwl

Branch/Commit ID: ca6ca613f0d3728d9589a6ca6293e66dfde87bfb
workflow graph SoupX (workflow) - an R package for the estimation and removal of cell free mRNA contamination

Wrapped in a workflow SoupX tool for easy access to Cell Ranger pipeline compressed outputs.

https://github.com/datirium/workflows.git

Path: tools/soupx-subworkflow.cwl

Branch/Commit ID: b1a5dabeeeb9079b30b2871edd9c9034a1e00c1c
workflow graph encode_mapping_workflow.cwl

https://github.com/encode-dcc/pipeline-container.git

Path: local-workflows/encode_mapping_workflow.cwl

Branch/Commit ID: 14405c3dd8d18f845b16b0e9872c7f3bf9b04736