Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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bam_filtering
BAM filtering |
https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/cwl/subworkflows/bam_filtering.cwl Branch/Commit ID: 26ae4914651d5b3e188028d1e9d88a391b3f6730 |
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tt_blastn_wnode
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https://github.com/ncbi/pgap.git
Path: task_types/tt_blastn_wnode.cwl Branch/Commit ID: 17bae57a1f00f5c6db8f3a82d86262f12b8153cf |
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cnv_codex
CNV CODEX calling |
https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/cwl/subworkflows/cnv_codex.cwl Branch/Commit ID: 26ae4914651d5b3e188028d1e9d88a391b3f6730 |
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process VCF workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/strelka_process_vcf.cwl Branch/Commit ID: 6b365b79675b2aabfb8d5829bb8df0a6e986b037 |
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readme-genePrediction-workflow.cwl
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https://github.com/NAL-i5K/Organism_Onboarding.git
Path: flow_create_readme/readme-genePrediction-workflow.cwl Branch/Commit ID: 8b8c6dd16e06b43fbb50f1c0821856a31f1bbbc5 |
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atm-std.cwl
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https://github.com/E3SM-Project/e3sm_to_cmip.git
Path: scripts/cwl_workflows/atm-mon-model-lev/atm-std.cwl Branch/Commit ID: d917f8952183f0b15fa078e04612171cab10c603 |
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Metagenomics workflow
Workflow pilon assembly polishing Steps: - BBmap (Read mapping to assembly) - Pilon |
https://git.wur.nl/unlock/cwl.git
Path: cwl/workflows/workflow_pilon_mapping.cwl Branch/Commit ID: d944d61ddc34a5b24ebac6e1701efd6f8fdf54ae |
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gcaccess_from_list
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https://github.com/ncbi/pgap.git
Path: task_types/tt_gcaccess_from_list.cwl Branch/Commit ID: 61eaea2f746c8a1fc2a2b731056b068e28ca4e20 |
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Varscan Workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/varscan_germline.cwl Branch/Commit ID: ec5355f335852e51c6938809c16ea1d230a3f983 |
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extract_gencoll_ids
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https://github.com/ncbi/pgap.git
Path: task_types/tt_extract_gencoll_ids.cwl Branch/Commit ID: 505b91e41741ccbcd5ebd2b6a09a3be604f9ece3 |
