Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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Build Bismark indices
Copy fasta_file file to the folder and run run bismark_genome_preparation script to prepare indices for Bismark Methylation Analysis. Bowtie2 aligner is used by default. The name of the output indices folder is equal to the genome input. |
https://github.com/datirium/workflows.git
Path: workflows/bismark-index.cwl Branch/Commit ID: 7fb8a1ebf8145791440bc2fed9c5f2d78a19d04c |
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tt_fscr_calls_pass1
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https://github.com/ncbi/pgap.git
Path: task_types/tt_fscr_calls_pass1.cwl Branch/Commit ID: 92118627c800e4addb7e29b9dabcca073a5bae71 |
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final_filtering
Final filtering |
https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/cwl/subworkflows/final_filtering.cwl Branch/Commit ID: 32a040f94e9798bf91858da51598f0d68c35797d |
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samtools_sort
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https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/cwl/subworkflows/samtools_sort.cwl Branch/Commit ID: 32a040f94e9798bf91858da51598f0d68c35797d |
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bam to trimmed fastqs and biscuit alignments
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/bam_to_trimmed_fastq_and_biscuit_alignments.cwl Branch/Commit ID: da335d9963418f7bedd84cb2791a0df1b3165ffe |
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Cellranger Reanalyze
Cellranger Reanalyze ==================== |
https://github.com/datirium/workflows.git
Path: workflows/cellranger-reanalyze.cwl Branch/Commit ID: 581156366f91861bd4dbb5bcb59f67d468b32af3 |
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Single-Cell Preprocessing Pipeline
Devel version of Single-Cell Preprocessing Pipeline =================================================== |
https://github.com/datirium/workflows.git
Path: workflows/single-cell-preprocess.cwl Branch/Commit ID: 581156366f91861bd4dbb5bcb59f67d468b32af3 |
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concat.cwl
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https://github.com/mskcc/pluto-cwl.git
Path: cwl/concat.cwl Branch/Commit ID: 5cad957fec135aa55ca8d588372db0557ca1cad5 |
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Functional analyis of sequences that match the 16S SSU
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/16S_taxonomic_analysis.cwl Branch/Commit ID: b6d3aaf3fa6695061208c6cdca3d7881cc45400d |
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assm_assm_blastn_wnode
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https://github.com/ncbi/pgap.git
Path: task_types/tt_assm_assm_blastn_wnode.cwl Branch/Commit ID: 72804b6506c9f54ec75627f82aafe6a28d7a49fa |
