Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	kmer_seq_entry_extract_wnode	https://github.com/ncbi-gpipe/pgap.git Path: task_types/tt_kmer_seq_entry_extract_wnode.cwl Branch/Commit ID: 70e530b65b33301032b7510095d89e497bf5e34e
	taxonomy_check_16S	https://github.com/ncbi/pgap.git Path: task_types/tt_taxonomy_check_16S.cwl Branch/Commit ID: 4f4448f71645275db5b84eb551990dfe3bf37cbb
	wf_self_consistency_ratio.cwl Computes the self-consistency ratio (see Gabe's protocols paper, or CHIP SEQ). Given two replicates, split each and perform IDR on each fragment. Returns the ratio of max(N1, N2)/min(N1, N2) where N1, N2 are the numbers of reproducible peaks found between each rep split pair.	https://github.com/YeoLab/merge_peaks.git Path: cwl/wf_self_consistency_ratio.cwl Branch/Commit ID: aedc0a14d4ba109ee65678a3201a52c5bb6ad473
	format_rrnas_from_seq_entry	https://github.com/ncbi/pgap.git Path: task_types/tt_format_rrnas_from_seq_entry.cwl Branch/Commit ID: f225cd99b0e0a5043dd102f8b33a6139fefe9ea4
	04-peakcall-se.cwl ATAC-seq 04 quantification - SE	https://github.com/alexbarrera/GGR-cwl.git Path: v1.0/ATAC-seq_pipeline/04-peakcall-se.cwl Branch/Commit ID: 1a0dd34d59ec983d1f7ad77bff35da2f016e3134
	Varscan Workflow	https://github.com/genome/cancer-genomics-workflow.git Path: varscan/workflow.cwl Branch/Commit ID: be7e682c6a2d0b24b949e022aeae7786bd8434ed
	workflow-slurmcern.cwl	https://github.com/reanahub/reana-demo-root6-roofit.git Path: workflow/cwl/workflow-slurmcern.cwl Branch/Commit ID: 1fbe52138b98a85a15fde58d385b21b637c18be8
	kmer_cache_store	https://github.com/ncbi/pgap.git Path: task_types/tt_kmer_cache_store.cwl Branch/Commit ID: f225cd99b0e0a5043dd102f8b33a6139fefe9ea4
	umi molecular alignment fastq workflow	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/alignment_umi_molecular.cwl Branch/Commit ID: 43c790e2ee6a0f3f42e40fb4d9a9005eb8de747a
	pindel parallel workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/pindel.cwl Branch/Commit ID: 7638b3075863ae8172f4adaec82fb2eb8e80d3d5