Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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varscan somatic workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/varscan.cwl Branch/Commit ID: a59a803e1809a8fbfabca6b8962a8ad66dd01f1d |
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workflow.cwl
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https://github.com/NAL-i5K/Organism_Onboarding.git
Path: flow_apollo2_data_processing/processing/workflow.cwl Branch/Commit ID: 677d79c721ad5f7a7e09b693d7f3fe2da70826e2 |
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blastp_wnode_naming
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https://github.com/ncbi/pgap.git
Path: task_types/tt_blastp_wnode_naming.cwl Branch/Commit ID: 90a321ecf2d049330bcf0657cc4d764d2c3f42dd |
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trimmed_fastq
Quality Control (raw data), Raw Data trimming and Quality Control (pre-processed) |
https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/cwl/abstract_operations/subworkflows/trimmed_fastq.cwl Branch/Commit ID: 3f6a871f81f343cf81a345f73ff2eeac70804b8c |
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umi per-lane alignment subworkflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/umi_alignment.cwl Branch/Commit ID: 479c9b3e3fa32ec9c7cd4073cfbccc675fd254d9 |
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wgs alignment with qc
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/alignment_wgs.cwl Branch/Commit ID: 889a077a20c0fdb01f4ed97aa4bc40f920c37a1a |
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exome alignment and germline variant detection
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/germline_detect_variants.cwl Branch/Commit ID: 889a077a20c0fdb01f4ed97aa4bc40f920c37a1a |
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Subworkflow to allow calling different SV callers which require bam files as inputs
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/single_sample_sv_callers.cwl Branch/Commit ID: 889a077a20c0fdb01f4ed97aa4bc40f920c37a1a |
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workflow.cwl
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https://github.com/NAL-i5K/Organism_Onboarding.git
Path: flow_dispatch/workflow.cwl Branch/Commit ID: 677d79c721ad5f7a7e09b693d7f3fe2da70826e2 |
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readme-assembly-workflow.cwl
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https://github.com/NAL-i5K/Organism_Onboarding.git
Path: flow_create_readme/readme-assembly-workflow.cwl Branch/Commit ID: 677d79c721ad5f7a7e09b693d7f3fe2da70826e2 |
