Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
|---|---|---|---|
|
|
sequence (bam or fastqs) to trimmed fastqs
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/sequence_to_trimmed_fastq.cwl Branch/Commit ID: 061d3a2fbcd8a1c39c0b38c549e528deb24a9d54 |
|
|
|
Pairwise genomic regions intersection
Pairwise genomic regions intersection ============================================= Overlaps peaks from two ChIP/ATAC experiments |
https://github.com/datirium/workflows.git
Path: workflows/peak-intersect.cwl Branch/Commit ID: 3d280a2a4b4f1560f56991086f712fa22ddc3364 |
|
|
|
Varscan Workflow
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/varscan_pre_and_post_processing.cwl Branch/Commit ID: 6b365b79675b2aabfb8d5829bb8df0a6e986b037 |
|
|
|
bwa_mem
|
https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/cwl/abstract_operations/subworkflows/bwa_mem.cwl Branch/Commit ID: 26ae4914651d5b3e188028d1e9d88a391b3f6730 |
|
|
|
cluster_blastp_wnode and gpx_qdump combined
|
https://github.com/ncbi/pgap.git
Path: task_types/tt_cluster_and_qdump.cwl Branch/Commit ID: add6b7724698694e0e72d972e2e85e1ae4e67902 |
|
|
|
group-isoforms-batch.cwl
Workflow runs group-isoforms.cwl tool using scatter for isoforms_file input. genes_filename and common_tss_filename inputs are ignored. |
https://github.com/datirium/workflows.git
Path: tools/group-isoforms-batch.cwl Branch/Commit ID: 3d280a2a4b4f1560f56991086f712fa22ddc3364 |
|
|
|
workflow.cwl
|
https://github.com/NAL-i5K/Organism_Onboarding.git
Path: flow_md5checksums/workflow.cwl Branch/Commit ID: aa375dcaa5ccfbb4e2aa4433d10948c641b044eb |
|
|
|
phase VCF
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/phase_vcf.cwl Branch/Commit ID: 40097e1ed094c5b42b68f3db2ff2cbe78c182479 |
|
|
|
scatter-wf2.cwl
|
https://github.com/common-workflow-language/cwltool.git
Path: cwltool/schemas/v1.0/v1.0/scatter-wf2.cwl Branch/Commit ID: 227f35a5ed50c423afba2353871950aa61d58872 |
|
|
|
step-valuefrom-wf.cwl
|
https://github.com/common-workflow-language/cwltool.git
Path: cwltool/schemas/v1.0/v1.0/step-valuefrom-wf.cwl Branch/Commit ID: 227f35a5ed50c423afba2353871950aa61d58872 |
