Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	Add snv and indel bam-readcount files to a vcf	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/vcf_readcount_annotator.cwl Branch/Commit ID: b9e7392e72506cadd898a6ac4db330baf6535ab6
	Replace legacy AML Trio Assay	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/cle_aml_trio.cwl Branch/Commit ID: 6f9f8a2057c6a9f221a44559f671e87a75c70075
	bam_readcount workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/bam_readcount.cwl Branch/Commit ID: b9e7392e72506cadd898a6ac4db330baf6535ab6
	bacterial_screening.cwl	https://github.com/ncbi/pgap.git Path: vecscreen/bacterial_screening.cwl Branch/Commit ID: f225cd99b0e0a5043dd102f8b33a6139fefe9ea4
	harmonization_novoalign_multi_readgroup.cwl	https://github.com/uc-cdis/genomel_pipelines.git Path: genomel/cwl/workflows/harmonization/harmonization_novoalign_multi_readgroup.cwl Branch/Commit ID: 28bb82ba031041321ff9caa5c299ec1bb15d7471
	vardictGermlineVariantCaller.cwl	https://github.com/PMCC-BioinformaticsCore/janis-pipelines.git Path: janis_pipelines/wgs_germline/cwl/tools/vardictGermlineVariantCaller.cwl Branch/Commit ID: 536f8181dd3edaa7339483cc28610e3acde5d105
	GATK4_GermlineVariantCaller.cwl	https://github.com/PMCC-BioinformaticsCore/janis-pipelines.git Path: janis_pipelines/wgs_germline/cwl/tools/GATK4_GermlineVariantCaller.cwl Branch/Commit ID: 536f8181dd3edaa7339483cc28610e3acde5d105
	BwaAligner.cwl	https://github.com/PMCC-BioinformaticsCore/janis-pipelines.git Path: janis_pipelines/wgs_germline/cwl/tools/BwaAligner.cwl Branch/Commit ID: 536f8181dd3edaa7339483cc28610e3acde5d105
	strelkaGermlineVariantCaller.cwl	https://github.com/PMCC-BioinformaticsCore/janis-pipelines.git Path: janis_pipelines/wgs_germline/cwl/tools/strelkaGermlineVariantCaller.cwl Branch/Commit ID: 536f8181dd3edaa7339483cc28610e3acde5d105
	mergeAndMarkBams.cwl	https://github.com/PMCC-BioinformaticsCore/janis-pipelines.git Path: janis_pipelines/wgs_germline/cwl/tools/mergeAndMarkBams.cwl Branch/Commit ID: 536f8181dd3edaa7339483cc28610e3acde5d105