Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph count-lines5-wf.cwl

https://github.com/common-workflow-language/cwltool.git

Path: cwltool/schemas/v1.0/v1.0/count-lines5-wf.cwl

Branch/Commit ID: 6f78ea7ddf746edb06436d57e085aec485cd7bc2
workflow graph rna amplicon analysis for fasta files

RNAs - qc, preprocess, annotation, index, abundance

 https://github.com/MG-RAST/pipeline.git

Path: CWL/Workflows/amplicon-fasta.workflow.cwl

Branch/Commit ID: 721aaf285e1848c3c52da38a1fed95192aeff8f4
workflow graph mut3.cwl

https://github.com/common-workflow-language/cwltool.git

Path: tests/wf/mut3.cwl

Branch/Commit ID: 1338ffbf2492a2ca1be1d7c5c46597bd9205aa24
workflow graph zip_and_index_vcf.cwl

This is a very simple workflow of two steps. It will zip an input VCF file and then index it. The zipped file and the index file will be in the workflow output.

https://github.com/david4096/oxog-dockstore-tools.git

Path: zip_and_index_vcf.cwl

Branch/Commit ID: develop
workflow graph FASTQ to BQSR

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/fastq_to_bqsr.cwl

Branch/Commit ID: a59a803e1809a8fbfabca6b8962a8ad66dd01f1d
workflow graph scRNA-seq pipeline using Salmon and Alevin

https://github.com/hubmapconsortium/visium-pipeline.git

Path: pipeline.cwl

Branch/Commit ID: ff4a5ce
workflow graph revcomp_with_rename.cwl

https://github.com/alexbarrera/GGR-cwl.git

Path: workflows/workflows/sanbi_cwltutorial/revcomp/revcomp_with_rename.cwl

Branch/Commit ID: master
workflow graph Salmon quantification, FASTQ -> H5AD count matrix

https://github.com/hubmapconsortium/salmon-rnaseq.git

Path: steps/salmon-quantification.cwl

Branch/Commit ID: 280478b
workflow graph Create Genomic Collection for Bacterial Pipeline

https://github.com/ncbi/pgap.git

Path: genomic_source/wf_genomic_source.cwl

Branch/Commit ID: dev
workflow graph EMG pipeline v3.0 (single end version)

https://github.com/proteinswebteam/ebi-metagenomics-cwl.git

Path: workflows/emg-pipeline-v3.cwl

Branch/Commit ID: a8abd0e