Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	Unaligned BAM to BQSR and VCF	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/bam_to_bqsr_no_dup_marking.cwl Branch/Commit ID: 6b365b79675b2aabfb8d5829bb8df0a6e986b037
	workflow.cwl	https://github.com/nal-i5k/organism_onboarding.git Path: flow_apollo2_data_processing/processing/workflow.cwl Branch/Commit ID: 7562bd2c6900b30bce6c6f78951cd76d28218f47
	bwa_mem	https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git Path: structuralvariants/cwl/subworkflows/bwa_mem.cwl Branch/Commit ID: 26ae4914651d5b3e188028d1e9d88a391b3f6730
	Unaligned BAM to BQSR	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/bam_to_bqsr.cwl Branch/Commit ID: 6949082038c1ad36d6e9848b97a2537aef2d3805
	CNV_pipeline	https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git Path: structuralvariants/cwl/abstract_workflow/abstract_workflow.cwl Branch/Commit ID: 26ae4914651d5b3e188028d1e9d88a391b3f6730
	Run pindel on provided region	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/pindel_region.cwl Branch/Commit ID: 061d3a2fbcd8a1c39c0b38c549e528deb24a9d54
	gcaccess_from_list	https://github.com/ncbi/pgap.git Path: task_types/tt_gcaccess_from_list.cwl Branch/Commit ID: 17bae57a1f00f5c6db8f3a82d86262f12b8153cf
	workflow.cwl	https://github.com/nal-i5k/organism_onboarding.git Path: flow_download/workflow.cwl Branch/Commit ID: 8b8c6dd16e06b43fbb50f1c0821856a31f1bbbc5
	Merge, annotate, and generate a TSV for SVs	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/merge_svs.cwl Branch/Commit ID: 40097e1ed094c5b42b68f3db2ff2cbe78c182479
	WGS QC workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/qc_wgs.cwl Branch/Commit ID: 6949082038c1ad36d6e9848b97a2537aef2d3805