Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	alignment for mouse with qc	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/alignment_wgs_mouse.cwl Branch/Commit ID: 42c66dd24ce5026d3f717214ddb18b7b4fae93cf
	taxonomy_check_16S	https://github.com/ncbi/pgap.git Path: task_types/tt_taxonomy_check_16S.cwl Branch/Commit ID: 3897218b16b30a933beecd60a98a300d677207d8
	trick_revsort.cwl Reverse the lines in a document, then sort those lines.	https://github.com/common-workflow-language/cwltool.git Path: tests/wf/trick_revsort.cwl Branch/Commit ID: 75271e2a0887d47cca4077b60dd51ac763c09b63
	blastp_wnode_naming	https://github.com/ncbi/pgap.git Path: task_types/tt_blastp_wnode_naming.cwl Branch/Commit ID: be465ad19b07378f3f863f2c4e0019b420c859f2
	Unaligned BAM to BQSR and VCF	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/bam_to_bqsr_no_dup_marking.cwl Branch/Commit ID: 389f6edccab082d947bee9c032f59dbdf9f7c325
	FASTQ to BQSR	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/fastq_to_bqsr.cwl Branch/Commit ID: bed420556091b7b8b45cf20a95e5947e1de9a416
	kmer_top_n_extract	https://github.com/ncbi/pgap.git Path: task_types/tt_kmer_top_n_extract.cwl Branch/Commit ID: bb2f26dfe630179737ec2ff08a8614f1f47abcaf
	running cellranger mkfastq and count	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/cellranger_mkfastq_and_count.cwl Branch/Commit ID: 35e6b3ef71b4a2a9caba1dbd5dc424a8809bcc0a
	Vcf concordance evaluation workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/vcf_eval_concordance.cwl Branch/Commit ID: 480c438a6a7e78c624712aec01bc4214d2bc179c
	cram_to_bam workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/cram_to_bam_and_index.cwl Branch/Commit ID: 480c438a6a7e78c624712aec01bc4214d2bc179c