Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph Optimize cuts and Generate IRF

Optimize event selection and compute an IRF using the results.

https://gitlab.cta-observatory.org/cta-computing/dpps/dpps-workflows.git

Path: datapipe/workflow_optimize_and_irf.cwl

Branch/Commit ID: 00038b11f42dee4e66a16b22214cc1779cf43461
workflow graph Detect Variants workflow

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/detect_variants.cwl

Branch/Commit ID: 6bfb64375e7ebb6eb40f463ede86d8deccdb9eff
workflow graph harmonization_bwa_mem.cwl

https://github.com/uc-cdis/genomel_pipelines.git

Path: genomel/cwl/workflows/harmonization/harmonization_bwa_mem.cwl

Branch/Commit ID: c84973e6e96d5232152a87bdd40ee8f5bab470c0
workflow graph exome alignment and germline variant detection, with optitype for HLA typing

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/germline_exome_hla_typing.cwl

Branch/Commit ID: 6bfb64375e7ebb6eb40f463ede86d8deccdb9eff
workflow graph somatic_exome: exome alignment and somatic variant detection

somatic_exome is designed to perform processing of mutant/wildtype H.sapiens exome sequencing data. It features BQSR corrected alignments, 4 caller variant detection, and vep style annotations. Structural variants are detected via manta and cnvkit. In addition QC metrics are run, including somalier concordance metrics. example input file = analysis_workflows/example_data/somatic_exome.yaml

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/somatic_exome.cwl

Branch/Commit ID: 6bfb64375e7ebb6eb40f463ede86d8deccdb9eff
workflow graph process_dl0_dl1_multiple.cwl

Process multiple dl0 files using process_dl0_dl1 and then merge the individual result files into one common output file using the merge tool. This is useful for processing simulation files in DIRAC as processing a single file per DIRAC job would result in very many, very short jobs that are not ideal for the workflow management system.

https://gitlab.cta-observatory.org/cta-computing/dpps/dpps-workflows.git

Path: datapipe/process_dl0_dl1_multiple.cwl

Branch/Commit ID: 00038b11f42dee4e66a16b22214cc1779cf43461
workflow graph workflow_input_sf_expr_v1_2.cwl

https://github.com/common-workflow-language/cwl-utils.git

Path: testdata/workflow_input_sf_expr_v1_2.cwl

Branch/Commit ID: e413f9b185f0060ffbdd876062133d65daecb7da
workflow graph steplevel-resreq.cwl

https://github.com/common-workflow-language/cwl-v1.2.git

Path: tests/steplevel-resreq.cwl

Branch/Commit ID: eb3f25a9e9414a7dba394f7627e02e63d7f1418c
workflow graph LBA_calibrator.cwl

https://git.astron.nl/eosc/prefactor3-cwl.git

Path: workflows/LBA_calibrator.cwl

Branch/Commit ID: b139045507381d9fdaad02d719c7b9bfe809fec8
workflow graph record-output-wf_v1_0.cwl

https://github.com/common-workflow-language/cwl-utils.git

Path: testdata/record-output-wf_v1_0.cwl

Branch/Commit ID: 02d6dbd3d48d50adfd4afb1f7d92e8a4284bcab9