Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	Vcf concordance evaluation workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/vcf_eval_concordance.cwl Branch/Commit ID: 061d3a2fbcd8a1c39c0b38c549e528deb24a9d54
	Subworkflow that runs cnvkit in single sample mode and returns a vcf file	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/cnvkit_single_sample.cwl Branch/Commit ID: 061d3a2fbcd8a1c39c0b38c549e528deb24a9d54
	kmer_cache_retrieve	https://github.com/ncbi/pgap.git Path: task_types/tt_kmer_cache_retrieve.cwl Branch/Commit ID: 1b8d71c75156a1a62bf0477d59db26010e2dcc29
	sequence (bam or fastqs) to trimmed fastqs	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/sequence_to_trimmed_fastq.cwl Branch/Commit ID: ef7f3345b352319ec22dffba26c79df033b141f9
	sequence (bam or fastqs) to trimmed fastqs	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/sequence_to_trimmed_fastq.cwl Branch/Commit ID: fbeea265295ae596d5a3ba563e766be0c4fc26e8
	Replace legacy AML Trio Assay	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/aml_trio_cle.cwl Branch/Commit ID: 25eab0390f6866ce491b44c89d9e0435d228ab6f
	Single-cell RNA-Seq Analyze Single-cell RNA-Seq Analyze ==================================================================== Runs filtering, normalization, scaling, integration (optionally) and clustering for a single or aggregated single-cell RNA-Seq datasets.	https://github.com/Barski-lab/scRNA-Seq-Analysis.git Path: workflows/sc-rna-analyze-wf.cwl Branch/Commit ID: 280cad66c2a5b2e1b66e4f8a5469942e88df5b74
	Single-cell RNA-Seq Analyze Single-cell RNA-Seq Analyze Runs filtering, normalization, scaling, integration (optionally) and clustering for a single or aggregated single-cell RNA-Seq datasets.	https://github.com/Barski-lab/scRNA-Seq-Analysis.git Path: workflows/sc-rna-analyze-wf.cwl Branch/Commit ID: 7bbe737324bb6f21f244dea09a926dc2774ed731
	AltAnalyze CellHarmony AltAnalyze CellHarmony ======================	https://github.com/datirium/workflows.git Path: workflows/altanalyze-cellharmony.cwl Branch/Commit ID: 480e99a4bb3046e0565113d9dca294e0895d3b0c
	tt_univec_wnode.cwl	https://github.com/ncbi/pgap.git Path: task_types/tt_univec_wnode.cwl Branch/Commit ID: 2801ce53744a085580a8de91cd007c45146b51e8