Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	hisat2-stringtie_wf_pe.cwl	https://github.com/pitagora-network/pitagora-cwl.git Path: workflows/hisat2-stringtie/paired_end/hisat2-stringtie_wf_pe.cwl Branch/Commit ID: 14c76e15665ef0566eae5c2be75dba7feb74a50b
	bgzip and index VCF	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/bgzip_and_index.cwl Branch/Commit ID: 788bdc99c1d5b6ee7c431c3c011eb30d385c1370
	tt_fscr_calls_pass1	https://github.com/ncbi/pgap.git Path: task_types/tt_fscr_calls_pass1.cwl Branch/Commit ID: add6b7724698694e0e72d972e2e85e1ae4e67902
	Run genomic CMsearch	https://github.com/ncbi/pgap.git Path: bacterial_noncoding/wf_gcmsearch.cwl Branch/Commit ID: 61eaea2f746c8a1fc2a2b731056b068e28ca4e20
	sequence (bam or fastqs) to trimmed fastqs and HISAT alignments	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/sequence_to_trimmed_fastq_and_hisat_alignments.cwl Branch/Commit ID: ef7f3345b352319ec22dffba26c79df033b141f9
	blastp_wnode_naming	https://github.com/ncbi/pgap.git Path: task_types/tt_blastp_wnode_naming.cwl Branch/Commit ID: 61eaea2f746c8a1fc2a2b731056b068e28ca4e20
	Downsample and HaplotypeCaller	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/downsample_and_recall.cwl Branch/Commit ID: 87faba2fff8007ecc95160729b1c7cd0376e46f2
	Tumor-Only Detect Variants workflow	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/tumor_only_detect_variants.cwl Branch/Commit ID: fbeea265295ae596d5a3ba563e766be0c4fc26e8
	Varscan Workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/varscan_germline.cwl Branch/Commit ID: 061d3a2fbcd8a1c39c0b38c549e528deb24a9d54
	gathered exome alignment and somatic variant detection for cle purpose	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/somatic_exome_cle_gathered.cwl Branch/Commit ID: ef7f3345b352319ec22dffba26c79df033b141f9