Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	gk-parse-current.cwl	https://github.com/vdikan/cwl-gk-thermal.git Path: cwl/gk-parse-current.cwl Branch/Commit ID: 48f4b8266a5a199cfc100d45148996f10a092f3b
	Unaligned bam to sorted, markduped bam	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/align_sort_markdup.cwl Branch/Commit ID: ef7f3345b352319ec22dffba26c79df033b141f9
	somatic_exome: exome alignment and somatic variant detection somatic_exome is designed to perform processing of mutant/wildtype H.sapiens exome sequencing data. It features BQSR corrected alignments, 4 caller variant detection, and vep style annotations. Structural variants are detected via manta and cnvkit. In addition QC metrics are run, including somalier concordance metrics. example input file = analysis_workflows/example_data/somatic_exome.yaml	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/somatic_exome.cwl Branch/Commit ID: fbeea265295ae596d5a3ba563e766be0c4fc26e8
	bam to trimmed fastqs and HISAT alignments	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/bam_to_trimmed_fastq_and_hisat_alignments.cwl Branch/Commit ID: 6949082038c1ad36d6e9848b97a2537aef2d3805
	Apply filters to VCF file	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/filter_vcf_nonhuman.cwl Branch/Commit ID: 2f65fc96207a71b1cda4e246f808bed056608cd0
	align_sort_sa	https://github.com/ncbi/pgap.git Path: task_types/tt_align_sort_sa.cwl Branch/Commit ID: add6b7724698694e0e72d972e2e85e1ae4e67902
	secondary_sqrt_workflow.cwl	https://github.com/vavien/bi-cwl.git Path: secondary_sqrt_workflow.cwl Branch/Commit ID: d40663cb07f9f0f700ddd1578f9a895dd8432070
	steps.cwl	https://github.com/DimitraPanou/scRNAseq-cwl.git Path: steps.cwl Branch/Commit ID: b8e641c2cb33197bdbdc04c9fb9cfbd818af1d94
	process VCF workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/strelka_process_vcf.cwl Branch/Commit ID: fbeea265295ae596d5a3ba563e766be0c4fc26e8
	hmmsearch_wnode and gpx_qdump combined workflow to apply scatter/gather	https://github.com/ncbi/pgap.git Path: task_types/tt_hmmsearch_wnode_plus_qdump.cwl Branch/Commit ID: 61eaea2f746c8a1fc2a2b731056b068e28ca4e20