Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph hybrid_error_correction.cwl

Sub workflow used in the Animal Genome Assembly pipeline by Kazuharu Arakawa (@gaou_ak), CWLized by Tazro Ohta (@inutano)

 https://github.com/pitagora-network/DAT2-cwl.git

Path: workflow/animal-genome-assembly/hybrid_error_correction.cwl

Branch/Commit ID: b63171820f546def8c26f558182912a71af88b48
workflow graph exome alignment and germline variant detection, with optitype for HLA typing

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/germline_exome_hla_typing.cwl

Branch/Commit ID: 87faba2fff8007ecc95160729b1c7cd0376e46f2
workflow graph atm-std.cwl

https://github.com/E3SM-Project/e3sm_to_cmip.git

Path: scripts/cwl_workflows/atm-mon-model-lev/atm-std.cwl

Branch/Commit ID: bfc1b812e0de6a86c4bf482fa738c0010b2658f8
workflow graph bact_get_kmer_reference

https://github.com/ncbi/pgap.git

Path: task_types/tt_bact_get_kmer_reference.cwl

Branch/Commit ID: 61eaea2f746c8a1fc2a2b731056b068e28ca4e20
workflow graph gk-store-xvs.cwl

https://github.com/vdikan/cwl-gk-thermal.git

Path: cwl/gk-store-xvs.cwl

Branch/Commit ID: 02e5bf961627e54ba18c4f832f4e3f463a9adc42
workflow graph Seed Search Compartments

https://github.com/ncbi/pgap.git

Path: protein_alignment/wf_seed.cwl

Branch/Commit ID: 61eaea2f746c8a1fc2a2b731056b068e28ca4e20
workflow graph atm-highfreq.cwl

https://github.com/E3SM-Project/e3sm_to_cmip.git

Path: scripts/cwl_workflows/atm-highfreq/atm-highfreq.cwl

Branch/Commit ID: bfc1b812e0de6a86c4bf482fa738c0010b2658f8
workflow graph Filter single sample sv vcf from depth callers(cnvkit/cnvnator)

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/sv_depth_caller_filter.cwl

Branch/Commit ID: ef7f3345b352319ec22dffba26c79df033b141f9
workflow graph Apply filters to VCF file

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/filter_vcf_nonhuman.cwl

Branch/Commit ID: fbeea265295ae596d5a3ba563e766be0c4fc26e8
workflow graph wgs alignment with qc

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/alignment_wgs.cwl

Branch/Commit ID: fbeea265295ae596d5a3ba563e766be0c4fc26e8