Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph manta.cwl

https://github.com/mskcc/ACCESS-Pipeline.git

Path: workflows/subworkflows/manta.cwl

Branch/Commit ID: master
workflow graph scatter-valuefrom-wf6.cwl

https://github.com/common-workflow-language/cwl-v1.2.git

Path: tests/scatter-valuefrom-wf6.cwl

Branch/Commit ID: 979083396fee912fca8ef778174216d317338a00
workflow graph scatter-wf2_v1_1.cwl

https://github.com/common-workflow-language/cwl-utils.git

Path: testdata/scatter-wf2_v1_1.cwl

Branch/Commit ID: 68843d2d829a337c7bb7dc51473f1ff68d6d59ca
workflow graph mut3.cwl

https://github.com/common-workflow-language/cwltool.git

Path: tests/wf/mut3.cwl

Branch/Commit ID: e6a1e1f3a3b3168028bd19aaf465826fa276a35b
workflow graph DeriveArrayElementCoordinates

Derive array element coordinates in the simulation pipeline coordinate system.

 https://github.com/gammasim/workflows.git

Path: workflows/DeriveArrayElementCoordinates.cwl

Branch/Commit ID: main
workflow graph mut.cwl

https://github.com/common-workflow-language/cwltool.git

Path: tests/wf/mut.cwl

Branch/Commit ID: 4a5fe26e32d244d95f9483c3edfc3df04f3e5f7b
workflow graph ChIP-Seq

This workflow execute peak caller and QC from ChIP-Seq. For TF 1. Do not use broad, call-summits, broad-cutoff. 2. nomodel = True For Histones (H3K27me3, H3K9me3, H3K36me3): 1. Use broad, call-summits, broad-cutoff == 0.1. 2. nomodel = False For other histone marks: 1. Do not use broad, broad-cutoff. 2. nomodel = False 3. call-summits = True

 https://github.com/ncbi/cwl-ngs-workflows-cbb.git

Path: workflows/ChIP-Seq/peak_caller-with-control.cwl

Branch/Commit ID: master
workflow graph ribosomal_cleanup

This workflow detect and remove ribosomal from a DNA fasta file

 https://github.com/ncbi/cwl-ngs-workflows-cbb.git

Path: workflows/Contamination/ribosomal-cleanup.cwl

Branch/Commit ID: master
workflow graph Running cellranger count and lineage inference

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/single_cell_rnaseq.cwl

Branch/Commit ID: c61af827113ebc41596aa839c65d21b4d2b0c8b6
workflow graph extract_gencoll_ids

https://github.com/ncbi/pgap.git

Path: task_types/tt_extract_gencoll_ids.cwl

Branch/Commit ID: efe2b9b032560e00269e06668b3aca56936ec291