Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph umi molecular alignment fastq workflow

https://github.com/fgomez02/analysis-workflows.git

Path: definitions/pipelines/umi_molecular_alignment.cwl

Branch/Commit ID: No_filters_detect_variants
workflow graph record-output-wf.cwl

https://github.com/common-workflow-language/common-workflow-language.git

Path: v1.0/v1.0/record-output-wf.cwl

Branch/Commit ID: master
workflow graph Merge, annotate, and generate a TSV for SVs

https://github.com/apaul7/cancer-genomics-workflow.git

Path: definitions/subworkflows/merge_svs.cwl

Branch/Commit ID: low-vaf
workflow graph Downsample and HaplotypeCaller

https://github.com/apaul7/cancer-genomics-workflow.git

Path: definitions/pipelines/downsample_and_recall.cwl

Branch/Commit ID: low-vaf
workflow graph exomeseq-gatk4-02-variantdiscovery.cwl

https://github.com/Duke-GCB/bespin-cwl.git

Path: subworkflows/exomeseq-gatk4-02-variantdiscovery.cwl

Branch/Commit ID: master
workflow graph Per-chromosome pindel

https://github.com/mnneveau/cancer-genomics-workflow.git

Path: pindel/pindel_cat.cwl

Branch/Commit ID: master
workflow graph gaps_or_not.cwl

https://github.com/nal-i5k/organism_onboarding.git

Path: gaps_or_not.cwl

Branch/Commit ID: master
workflow graph pcr-bottleneck-coef.cwl

ChIP-seq - map - PCR Bottleneck Coefficients

 https://github.com/Duke-GCB/GGR-cwl.git

Path: v1.0/map/pcr-bottleneck-coef.cwl

Branch/Commit ID: v1.0.0
workflow graph uncollapsed_bam_generation.cwl

https://github.com/msk-access/uncollapsed_bam_generation.git

Path: uncollapsed_bam_generation.cwl

Branch/Commit ID: master
workflow graph exome alignment with qc, no bqsr, no verify_bam_id

https://github.com/tmooney/cancer-genomics-workflow.git

Path: definitions/pipelines/alignment_exome_mouse.cwl

Branch/Commit ID: downsample_and_recall