Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	Running cellranger count and lineage inference	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/single_cell_rnaseq.cwl Branch/Commit ID: 9a657bc8c462542dc7f57fba9e04dc1669f966ba
	wgs alignment and germline variant detection	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/germline_wgs_gvcf.cwl Branch/Commit ID: 87faba2fff8007ecc95160729b1c7cd0376e46f2
	Bisulfite alignment and QC	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/bisulfite.cwl Branch/Commit ID: 87faba2fff8007ecc95160729b1c7cd0376e46f2
	workflow.cwl	https://github.com/nal-i5k/organism_onboarding.git Path: flow_dispatch/2other_species/workflow.cwl Branch/Commit ID: 89cff9f0d36a23bf57b3f4bdbd3ed57e3347c945
	genomics-workspace-cds.cwl	https://github.com/NAL-i5K/Organism_Onboarding.git Path: flow_genomicsWorkspace/genomics-workspace-cds.cwl Branch/Commit ID: 89cff9f0d36a23bf57b3f4bdbd3ed57e3347c945
	exome alignment and germline variant detection, with optitype for HLA typing	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/germline_exome_hla_typing.cwl Branch/Commit ID: ef7f3345b352319ec22dffba26c79df033b141f9
	ani_top_n	https://github.com/ncbi/pgap.git Path: task_types/tt_ani_top_n.cwl Branch/Commit ID: 6fad27f92dd604eca0e341178f594a560d70953b
	Chipseq alignment for nonhuman with qc and creating homer tag directory	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/chipseq_alignment_nonhuman.cwl Branch/Commit ID: ef7f3345b352319ec22dffba26c79df033b141f9
	kmer_cache_retrieve	https://github.com/ncbi/pgap.git Path: task_types/tt_kmer_cache_retrieve.cwl Branch/Commit ID: 8fbfb03088968846bb2c0a79ac50b231b43db64f
	cram_to_bam workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/cram_to_bam_and_index.cwl Branch/Commit ID: ef7f3345b352319ec22dffba26c79df033b141f9