Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	downsample unaligned BAM and align	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/downsampled_alignment.cwl Branch/Commit ID: cc3e7f1ccfdc7101c22bf88792608504eea7d53a
	Nested workflow example	https://github.com/common-workflow-language/cwltool.git Path: tests/wf/nested.cwl Branch/Commit ID: 07ebbea2bdf97955060c1dd563580b386388519b
	Filter single sample sv vcf from depth callers(cnvkit/cnvnator)	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/sv_depth_caller_filter.cwl Branch/Commit ID: 8c4e7372247a7f4ed9ed478ef8ea1d239bc88af0
	bam to trimmed fastqs and biscuit alignments	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/bam_to_trimmed_fastq_and_biscuit_alignments.cwl Branch/Commit ID: 2e298960837739717ec2928a99c5d811183012e6
	workflow.cwl	https://github.com/imilos/silicofcm-workflows.git Path: pak-fs/workflow.cwl Branch/Commit ID: 92d00c0d6fd5d462606bbaf0a8a9fc039d3d2c83
	Workflow to run pVACseq from detect_variants and rnaseq pipeline outputs	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/pvacseq.cwl Branch/Commit ID: 4aba7c6591c2f1ebd827a36d325a58738c429bea
	Unaligned BAM to BQSR and VCF	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/bam_to_bqsr_no_dup_marking.cwl Branch/Commit ID: ece70ac30cd87100a70f7dc64d08fa72724e9416
	VIRTUS.PE.singlevirus.cwl	https://github.com/yyoshiaki/VIRTUS.git Path: workflow/VIRTUS.PE.singlevirus.cwl Branch/Commit ID: 49687daefb8ae715386f722702755ffaa49283e6
	annotator_sub_wf.cwl This is a subworkflow of the main oxog_varbam_annotat_wf workflow - this is not meant to be run as a stand-alone workflow!	https://github.com/baminou/OxoG-Dockstore-Tools.git Path: annotator_sub_wf.cwl Branch/Commit ID: f736cf8f663fbba8f1b4158431f2b6a6d88491b4
	revsort.cwl Reverse the lines in a document, then sort those lines.	https://github.com/common-workflow-language/cwltool.git Path: tests/wf/revsort.cwl Branch/Commit ID: 814bd0405a7701efc7d63e8f0179df394c7766f7