Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	Execute CRISPR	https://github.com/ncbi/pgap.git Path: bacterial_mobile_elem/wf_bacterial_mobile_elem.cwl Branch/Commit ID: 9362082213e20315f76f6f5c235cac3aae565747
	Detect Variants workflow for WGS pipeline	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/detect_variants_wgs.cwl Branch/Commit ID: 2e0562a5c3cd7aac24af4c622a5ae68a7fb23a71
	format_rrnas_from_seq_entry	https://github.com/ncbi/pgap.git Path: task_types/tt_format_rrnas_from_seq_entry.cwl Branch/Commit ID: 9362082213e20315f76f6f5c235cac3aae565747
	Bacterial Annotation, pass 3, structural annotation, functional annotation: ab initio GeneMark, by WP, by HMM (second pass)	https://github.com/ncbi/pgap.git Path: bacterial_annot/wf_bacterial_annot_pass3.cwl Branch/Commit ID: 9362082213e20315f76f6f5c235cac3aae565747
	bact_get_kmer_reference	https://github.com/ncbi/pgap.git Path: task_types/tt_bact_get_kmer_reference.cwl Branch/Commit ID: 9362082213e20315f76f6f5c235cac3aae565747
	tt_blastn_wnode	https://github.com/ncbi/pgap.git Path: task_types/tt_blastn_wnode.cwl Branch/Commit ID: 9362082213e20315f76f6f5c235cac3aae565747
	workflow.cwl	https://github.com/nal-i5k/organism_onboarding.git Path: flow_dispatch/2working_files/workflow.cwl Branch/Commit ID: 89cff9f0d36a23bf57b3f4bdbd3ed57e3347c945
	sequence (bam or fastqs) to trimmed fastqs	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/sequence_to_trimmed_fastq.cwl Branch/Commit ID: 25eab0390f6866ce491b44c89d9e0435d228ab6f
	align_sort_sa	https://github.com/ncbi/pgap.git Path: task_types/tt_align_sort_sa.cwl Branch/Commit ID: 9362082213e20315f76f6f5c235cac3aae565747
	alignment_workflow_md5checker.cwl	https://github.com/DataBiosphere/topmed-workflows.git Path: aligner/topmed-cwl/workflow/alignment_workflow_md5checker.cwl Branch/Commit ID: e38476e95ed65d5e4c7748741d2e457a8fbd78a0