Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	cnv_gridss CNV GRIDSS calling	https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git Path: structuralvariants/cwl/subworkflows/cnv_gridss.cwl Branch/Commit ID: 572d9e6b9264d98967b33d18110b0e1979b21d6c
	samtools_sort	https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git Path: structuralvariants/cwl/subworkflows/samtools_sort.cwl Branch/Commit ID: 5230874e81911b6591cf859fe794f71f4eb8bb97
	cnv_codex CNV CODEX calling	https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git Path: structuralvariants/cwl/subworkflows/cnv_codex.cwl Branch/Commit ID: 572d9e6b9264d98967b33d18110b0e1979b21d6c
	wgs alignment and tumor-only variant detection	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/tumor_only_wgs.cwl Branch/Commit ID: 3b6d0475c80f5e452793a46a38ee188742b86595
	bwa_mem	https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git Path: structuralvariants/cwl/subworkflows/bwa_mem.cwl Branch/Commit ID: 5230874e81911b6591cf859fe794f71f4eb8bb97
	samtools_view_sam2bam	https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git Path: structuralvariants/cwl/subworkflows/samtools_view_sam2bam.cwl Branch/Commit ID: 572d9e6b9264d98967b33d18110b0e1979b21d6c
	CLE gold vcf evaluation workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/vcf_eval_cle_gold.cwl Branch/Commit ID: 25eab0390f6866ce491b44c89d9e0435d228ab6f
	format_rrnas_from_seq_entry	https://github.com/ncbi/pgap.git Path: task_types/tt_format_rrnas_from_seq_entry.cwl Branch/Commit ID: 609aead9804a8f31fa9b3dbc7e52105aec487f31
	picard_markduplicates Mark duplicates	https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git Path: structuralvariants/cwl/abstract_operations/subworkflows/picard_markduplicates.cwl Branch/Commit ID: 27011e882ea07bfcac23faec299341ec6215312b
	final_filtering Final filtering	https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git Path: structuralvariants/cwl/abstract_operations/subworkflows/final_filtering.cwl Branch/Commit ID: 27011e882ea07bfcac23faec299341ec6215312b