Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	fp_filter workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/fp_filter.cwl Branch/Commit ID: 25eab0390f6866ce491b44c89d9e0435d228ab6f
	Subworkflow to allow calling different SV callers which require bam files as inputs	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/single_sample_sv_callers.cwl Branch/Commit ID: 25eab0390f6866ce491b44c89d9e0435d228ab6f
	heatmap-prepare.cwl Workflow runs homer-make-tag-directory.cwl tool using scatter for the following inputs - bam_file - fragment_size - total_reads `dotproduct` is used as a `scatterMethod`, so one element will be taken from each array to construct each job: 1) bam_file[0] fragment_size[0] total_reads[0] 2) bam_file[1] fragment_size[1] total_reads[1] ... N) bam_file[N] fragment_size[N] total_reads[N] `bam_file`, `fragment_size` and `total_reads` arrays should have the identical order.	https://github.com/Barski-lab/workflows.git Path: tools/heatmap-prepare.cwl Branch/Commit ID: 812b0ff40dda18ab7a9a872ff13a577be8531ba6
	portal-workflow.cwl	https://github.com/mskcc/pluto-cwl.git Path: cwl/portal-workflow.cwl Branch/Commit ID: ba3ff09328cc646d7254b2d2ee0fbe1abca3d4ad
	createindex.cwl	https://github.com/yyoshiaki/virtus.git Path: workflow/createindex.cwl Branch/Commit ID: 16dbe9d99137cbfee834fc22b79190f812543f7e
	Varscan Workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/varscan_germline.cwl Branch/Commit ID: 25eab0390f6866ce491b44c89d9e0435d228ab6f
	foreign_screening.cwl	https://github.com/ncbi/pgap.git Path: vecscreen/foreign_screening.cwl Branch/Commit ID: 9362082213e20315f76f6f5c235cac3aae565747
	msi_workflow.cwl Workflow to run the MSI analysis on a batch of samples and merge the results back into a single data clinical file	https://github.com/mskcc/pluto-cwl.git Path: cwl/msi_workflow.cwl Branch/Commit ID: ba3ff09328cc646d7254b2d2ee0fbe1abca3d4ad
	bulk_analysis.cwl	https://github.com/hubmapconsortium/sc-atac-seq-pipeline.git Path: steps/bulk_analysis.cwl Branch/Commit ID: 97586613d396c4389d013cc46e37fc7aa5974f28
	exome alignment and germline variant detection	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/germline_detect_variants.cwl Branch/Commit ID: 25eab0390f6866ce491b44c89d9e0435d228ab6f