Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	samtools_sort	https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git Path: structuralvariants/subworkflows/samtools_sort.cwl Branch/Commit ID: 5cc8306ce84c027db4c092077983294557213136
	tt_blastn_wnode	https://github.com/ncbi/pgap.git Path: task_types/tt_blastn_wnode.cwl Branch/Commit ID: 369afa7090a7480e6a0b144eff967a4a52b6fde2
	Whole genome alignment and somatic variant detection	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/somatic_wgs.cwl Branch/Commit ID: 25eab0390f6866ce491b44c89d9e0435d228ab6f
	PGAP Pipeline PGAP pipeline for external usage, powered via containers	https://github.com/ncbi/pgap.git Path: wf_common.cwl Branch/Commit ID: 9362082213e20315f76f6f5c235cac3aae565747
	ani_top_n	https://github.com/ncbi/pgap.git Path: task_types/tt_ani_top_n.cwl Branch/Commit ID: 8fbfb03088968846bb2c0a79ac50b231b43db64f
	samtools_view_sam2bam	https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git Path: structuralvariants/cwl/subworkflows/samtools_view_sam2bam.cwl Branch/Commit ID: f248ac3ccbf6840af721251c7e9451abd9b2c09f
	Gathered Downsample and HaplotypeCaller	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/gathered_downsample_and_recall.cwl Branch/Commit ID: a08de598edc04f340fdbff76c9a92336a7702022
	alignment for nonhuman with qc	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/alignment_wgs_nonhuman.cwl Branch/Commit ID: 25eab0390f6866ce491b44c89d9e0435d228ab6f
	Detect Variants workflow	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/detect_variants.cwl Branch/Commit ID: 25eab0390f6866ce491b44c89d9e0435d228ab6f
	cnv_codex CNV CODEX calling	https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git Path: structuralvariants/cwl/subworkflows/cnv_codex.cwl Branch/Commit ID: f248ac3ccbf6840af721251c7e9451abd9b2c09f