Explore Workflows
View already parsed workflows here or click here to add your own
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autosubmit.cwl
An example workflow created using Autosubmit's basic a000 workflow as reference. The `platform.yml` is ignored as it contains only information about platforms (e.g. it could be given to a tool like Troika as-is). `expdef.yml` and `autosubmit.yml` basically provide CWL inputs. `jobs.yml` contains the steps of the CWL workflow, with their dependencies. In CWL dependencies are specified via inputs and outputs. When task A outputs a value X, and task B has an input of type A/X, then the dependency A -> B is created in CWl. This is different than Autosubmit, and needs some care to guarantee the correct order in the workflow graph of start dates, members, chunks, etc. |
Path: notes/autosubmit/autosubmit.cwl Branch/Commit ID: 42102d0c2c4e38c63d797b73271ff5fca2a5a11b |
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step_valuefrom5_wf_v1_2.cwl
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Path: testdata/step_valuefrom5_wf_v1_2.cwl Branch/Commit ID: ebd041f35a1179668e9a7490249d651a6cc034b7 |
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annotate.cwl
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Path: steps/annotate.cwl Branch/Commit ID: 580e83c0d1ff3b5040c25d010e1b80bceefce17f |
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taxonomy_check_16S
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Path: task_types/tt_taxonomy_check_16S.cwl Branch/Commit ID: 251343ee5b7586ba2cf89458555f1da87a7558f2 |
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record-output-wf_v1_1.cwl
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Path: testdata/record-output-wf_v1_1.cwl Branch/Commit ID: ebd041f35a1179668e9a7490249d651a6cc034b7 |
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scatter-wf2_v1_0.cwl
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Path: testdata/scatter-wf2_v1_0.cwl Branch/Commit ID: ebd041f35a1179668e9a7490249d651a6cc034b7 |
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worldpopulation-slurmcern.cwl
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Path: workflow/cwl/worldpopulation-slurmcern.cwl Branch/Commit ID: 29c4df012073ed40e16a26490b4d9d5506d93cd1 |
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scatter-wf1_v1_1.cwl
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Path: testdata/scatter-wf1_v1_1.cwl Branch/Commit ID: ebd041f35a1179668e9a7490249d651a6cc034b7 |
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LBA_calibrator.cwl
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Path: workflows/LBA_calibrator.cwl Branch/Commit ID: 5944b0c7a4fb82f4b3f8df422d6f277777c3828e |
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taxcheck.cwl
Perform taxonomic identification tasks on an input genome |
Path: taxcheck.cwl Branch/Commit ID: 424a01693259a75641dc249d553235aa38a6ce23 |
