Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph autosubmit.cwl

An example workflow created using Autosubmit's basic a000 workflow as reference. The `platform.yml` is ignored as it contains only information about platforms (e.g. it could be given to a tool like Troika as-is). `expdef.yml` and `autosubmit.yml` basically provide CWL inputs. `jobs.yml` contains the steps of the CWL workflow, with their dependencies. In CWL dependencies are specified via inputs and outputs. When task A outputs a value X, and task B has an input of type A/X, then the dependency A -> B is created in CWl. This is different than Autosubmit, and needs some care to guarantee the correct order in the workflow graph of start dates, members, chunks, etc.

https://github.com/kinow/kinoshita.eti.br.git

Path: notes/autosubmit/autosubmit.cwl

Branch/Commit ID: 42102d0c2c4e38c63d797b73271ff5fca2a5a11b
workflow graph step_valuefrom5_wf_v1_2.cwl

https://github.com/common-workflow-language/cwl-utils.git

Path: testdata/step_valuefrom5_wf_v1_2.cwl

Branch/Commit ID: ebd041f35a1179668e9a7490249d651a6cc034b7
workflow graph annotate.cwl

https://github.com/hubmapconsortium/hra-workflows.git

Path: steps/annotate.cwl

Branch/Commit ID: 580e83c0d1ff3b5040c25d010e1b80bceefce17f
workflow graph taxonomy_check_16S

https://github.com/ncbi/pgap.git

Path: task_types/tt_taxonomy_check_16S.cwl

Branch/Commit ID: 251343ee5b7586ba2cf89458555f1da87a7558f2
workflow graph record-output-wf_v1_1.cwl

https://github.com/common-workflow-language/cwl-utils.git

Path: testdata/record-output-wf_v1_1.cwl

Branch/Commit ID: ebd041f35a1179668e9a7490249d651a6cc034b7
workflow graph scatter-wf2_v1_0.cwl

https://github.com/common-workflow-language/cwl-utils.git

Path: testdata/scatter-wf2_v1_0.cwl

Branch/Commit ID: ebd041f35a1179668e9a7490249d651a6cc034b7
workflow graph worldpopulation-slurmcern.cwl

https://github.com/reanahub/reana-demo-worldpopulation.git

Path: workflow/cwl/worldpopulation-slurmcern.cwl

Branch/Commit ID: 29c4df012073ed40e16a26490b4d9d5506d93cd1
workflow graph scatter-wf1_v1_1.cwl

https://github.com/common-workflow-language/cwl-utils.git

Path: testdata/scatter-wf1_v1_1.cwl

Branch/Commit ID: ebd041f35a1179668e9a7490249d651a6cc034b7
workflow graph LBA_calibrator.cwl

https://git.astron.nl/RD/LINC.git

Path: workflows/LBA_calibrator.cwl

Branch/Commit ID: 5944b0c7a4fb82f4b3f8df422d6f277777c3828e
workflow graph taxcheck.cwl

Perform taxonomic identification tasks on an input genome

https://github.com/ncbi/pgap.git

Path: taxcheck.cwl

Branch/Commit ID: 424a01693259a75641dc249d553235aa38a6ce23