Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	kmer_cache_store	https://github.com/ncbi/pgap.git Path: task_types/tt_kmer_cache_store.cwl Branch/Commit ID: 33dcc054a8718edad26440f085d73b7c5d7b7871
	scatter2.cwl	https://github.com/common-workflow-language/cwltool.git Path: tests/wf/scatter2.cwl Branch/Commit ID: 5bdb3d3dd47d8d1b3a1685220b4b6ce0f94c055e
	basename-fields-test.cwl	https://github.com/common-workflow-language/cwl-v1.2.git Path: tests/basename-fields-test.cwl Branch/Commit ID: a0f2d38e37ff51721fdeaf993bb2ab474b17246b
	WGS QC workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/qc_wgs.cwl Branch/Commit ID: 2e298960837739717ec2928a99c5d811183012e6
	workflow.cwl	https://github.com/nal-i5k/organism_onboarding.git Path: flow_dispatch/2working_files/workflow.cwl Branch/Commit ID: c6077d2756e628f469b446e1584ac8a86582d729
	Unaligned BAM to BQSR	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/bam_to_bqsr.cwl Branch/Commit ID: f42c889734c8f709ad2fd9090493bcaac8326c98
	kmer_cache_retrieve	https://github.com/ncbi/pgap.git Path: task_types/tt_kmer_cache_retrieve.cwl Branch/Commit ID: b560e3abadfb150a0013376d7a189df066ab56f9
	trimmed_fastq Quality Control (raw data), Raw Data trimming and Quality Control (pre-processed)	https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git Path: structuralvariants/subworkflows/trimmed_fastq.cwl Branch/Commit ID: c494fa4f60d9215842c4d2c75ed7d89757435b0f
	cnv_codex CNV CODEX calling	https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git Path: structuralvariants/subworkflows/cnv_codex.cwl Branch/Commit ID: c494fa4f60d9215842c4d2c75ed7d89757435b0f
	Bacterial Annotation, pass 4, blastp-based functional annotation (second pass)	https://github.com/ncbi/pgap.git Path: bacterial_annot/wf_bacterial_annot_pass4.cwl Branch/Commit ID: 9362082213e20315f76f6f5c235cac3aae565747