Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	Merge, annotate, and generate a TSV for SVs	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/merge_svs.cwl Branch/Commit ID: e56f1024306aeb427d8aae2fff715ed2e8b8f86f
	bact_get_kmer_reference	https://github.com/ncbi/pgap.git Path: task_types/tt_bact_get_kmer_reference.cwl Branch/Commit ID: 3897218b16b30a933beecd60a98a300d677207d8
	tt_kmer_compare_wnode	https://github.com/ncbi/pgap.git Path: task_types/tt_kmer_compare_wnode.cwl Branch/Commit ID: b12ec8c8e832151033b9e6c0a76a3c3df18d45da
	bact_get_kmer_reference	https://github.com/ncbi/pgap.git Path: task_types/tt_bact_get_kmer_reference.cwl Branch/Commit ID: bb2f26dfe630179737ec2ff08a8614f1f47abcaf
	align_sort_sa	https://github.com/ncbi/pgap.git Path: task_types/tt_align_sort_sa.cwl Branch/Commit ID: f18c1dce463509170ee3bf2844d5a3637ff706f5
	Raw sequence data to BQSR	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/sequence_to_bqsr.cwl Branch/Commit ID: 509938802c5e42bb8084c6a5a26ab6425c60e69a
	align_merge_sas	https://github.com/ncbi/pgap.git Path: task_types/tt_align_merge_sas.cwl Branch/Commit ID: f6950321e5c9ee733ad68a273d2ad8e802a6b982
	Subworkflow to allow calling different SV callers which require bam files as inputs	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/single_sample_sv_callers.cwl Branch/Commit ID: 3a287b7cb6162cdea79865235d224fea45963d87
	Merge, annotate, and generate a TSV for SVs	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/merge_svs.cwl Branch/Commit ID: 389f6edccab082d947bee9c032f59dbdf9f7c325
	samtools_mpileup_subpipeline.cwl	https://github.com/PMCC-BioinformaticsCore/janis-pipelines.git Path: janis_pipelines/wgs_somatic/cwl/tools/samtools_mpileup_subpipeline.cwl Branch/Commit ID: db347697cbf46ed1d160d50666943bd56a2646f4