Explore Workflows
View already parsed workflows here or click here to add your own
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find_hotspots_in_normals.cwl
Workflow to find hotspot VAFs from duplex (for Tumor sample) and unfiltered (for Normal sample) pileups. These inputs are all required to be sorted in the same order: sample_ids patient_ids sample_classes unfiltered_pileups duplex_pileups |
Path: workflows/subworkflows/find_hotspots_in_normals.cwl Branch/Commit ID: master |
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env-wf2.cwl
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Path: v1.0/v1.0/env-wf2.cwl Branch/Commit ID: master |
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docker_VisIVO_ImpFilterView_Workflow_GADGET_PD.cwl
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Path: Workflow_4/docker_VisIVO_ImpFilterView_Workflow_GADGET_PD.cwl Branch/Commit ID: main |
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trnascan_wnode and gpx_qdump combined
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Path: bacterial_trna/wf_scan_and_dump.cwl Branch/Commit ID: 068222510fdab75046c7f733a0cc919e36744ade |
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EMG assembly for paired end Illumina
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Path: workflows/emg-assembly.cwl Branch/Commit ID: 3168316 |
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workflow_inputs.cwl
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Path: wdl2cwl/tests/cwl_files/workflow_inputs.cwl Branch/Commit ID: main |
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joint genotyping for trios or small cohorts
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Path: definitions/subworkflows/joint_genotype.cwl Branch/Commit ID: master |
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multiome pipeline using Salmon and Alevin (HuBMAP scRNA-seq pipeline) and HuBMAP scATAC-seq pipeline
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Path: pipeline.cwl Branch/Commit ID: 999afe5 |
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mut.cwl
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Path: tests/wf/mut.cwl Branch/Commit ID: 20f01e04328537714e57d136e242d3e7a9d44266 |
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mut3.cwl
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Path: tests/wf/mut3.cwl Branch/Commit ID: 544f108b906c179520b0a6d64c3c21d168b48fa2 |
